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Protein

Probable LRR receptor-like serine/threonine-protein kinase At1g56140

Gene

At1g56140

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei721ATPPROSITE-ProRule annotation1
<p>This subsection of the ‘Function’ section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei817Proton acceptorPROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi699 – 707ATPPROSITE-ProRule annotation9

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • ATP binding Source: UniProtKB-KW
  • protein serine/threonine kinase activity Source: GO_Central

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionKinase, Receptor, Serine/threonine-protein kinase, Transferase
LigandATP-binding, Nucleotide-binding

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (EC:2.7.11.1)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At1g56140
ORF Names:F14G9.24, T6H22.8.1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT1G56140

The Arabidopsis Information Resource

More...
TAIRi
locus:2011816 AT1G56140

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the subcellular compartment where each non-membrane region of a membrane-spanning protein is found.<p><a href='/help/topo_dom' target='_top'>More...</a></p>Topological domaini29 – 636ExtracellularSequence analysisAdd BLAST608
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei637 – 657HelicalSequence analysisAdd BLAST21
Topological domaini658 – 1033CytoplasmicSequence analysisAdd BLAST376

Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 28Sequence analysisAdd BLAST28
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000038753629 – 1033Probable LRR receptor-like serine/threonine-protein kinase At1g56140Add BLAST1005

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi30N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi60N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi94N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi144N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi181N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi264N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi280N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi301N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi347N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi351N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi393N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi579N-linked (GlcNAc...) asparagineSequence analysis1
<p>This subsection of the ‘PTM / Processing’ section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei682PhosphothreonineBy similarity1
Modified residuei766PhosphotyrosineBy similarity1
Modified residuei821PhosphoserineBy similarity1
Modified residuei850PhosphoserineBy similarity1
Modified residuei851PhosphothreonineBy similarity1
Modified residuei856PhosphothreonineBy similarity1
Modified residuei864PhosphotyrosineBy similarity1

Keywords - PTMi

Glycoprotein, Phosphoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
C0LGH3

PRoteomics IDEntifications database

More...
PRIDEi
C0LGH3

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

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iPTMneti
C0LGH3

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
C0LGH3 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
C0LGH3 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT1G56140.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
C0LGH3

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
C0LGH3

Database of comparative protein structure models

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ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati97 – 121LRR 1Add BLAST25
Repeati122 – 145LRR 2Add BLAST24
Repeati147 – 169LRR 3Add BLAST23
Repeati170 – 193LRR 4Add BLAST24
Repeati195 – 217LRR 5Add BLAST23
Repeati241 – 264LRR 6Add BLAST24
Repeati265 – 288LRR 7Add BLAST24
Repeati289 – 313LRR 8Add BLAST25
Repeati314 – 337LRR 9Add BLAST24
Repeati339 – 361LRR 10Add BLAST23
Repeati363 – 382LRR 11Add BLAST20
Repeati383 – 406LRR 12Add BLAST24
Repeati422 – 445LRR 13Add BLAST24
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini693 – 951Protein kinasePROSITE-ProRule annotationAdd BLAST259

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.PROSITE-ProRule annotation

Keywords - Domaini

Leucine-rich repeat, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG410IK0I Eukaryota
ENOG410XSG4 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000116550

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
C0LGH3

Identification of Orthologs from Complete Genome Data

More...
OMAi
FIRHSVW

Database of Orthologous Groups

More...
OrthoDBi
EOG0936000Y

Database for complete collections of gene phylogenies

More...
PhylomeDBi
C0LGH3

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.80.10.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011009 Kinase-like_dom_sf
IPR001611 Leu-rich_rpt
IPR032675 LRR_dom_sf
IPR021720 Malectin_dom
IPR000719 Prot_kinase_dom
IPR001245 Ser-Thr/Tyr_kinase_cat_dom
IPR008271 Ser/Thr_kinase_AS

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13855 LRR_8, 1 hit
PF11721 Malectin, 1 hit
PF07714 Pkinase_Tyr, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00220 S_TKc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF56112 SSF56112, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50011 PROTEIN_KINASE_DOM, 1 hit
PS00108 PROTEIN_KINASE_ST, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (4)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 4 <p>This subsection of the ‘Sequence’ section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform 1 (identifier: C0LGH3-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MLRLWRYLCL LLTVWFLCNF GPVYVVRAQN RTGATTHPDE ALALNSIFAA
60 70 80 90 100
WRIRAPREWN ISGELCSGAA IDASVLDSNP AYNPLIKCDC SFENSTICRI
110 120 130 140 150
TNIKVYAMEV VGSIPQQLWT LEYLTNLNLG QNVLTGSLPP ALGNLTRMRW
160 170 180 190 200
MTFGINALSG PIPKEIGLLT DLRLLSISSN NFSGSIPDEI GRCTKLQQIY
210 220 230 240 250
IDSSGLSGGL PVSFANLVEL EQAWIADMEL TGQIPDFIGD WTKLTTLRIL
260 270 280 290 300
GTGLSGPIPA SFSNLTSLTE LRLGDISNGN SSLEFIKDMK SLSILVLRNN
310 320 330 340 350
NLTGTIPSNI GEYSSLRQLD LSFNKLHGTI PASLFNLRQL THLFLGNNTL
360 370 380 390 400
NGSLPTQKGQ SLSNVDVSYN DLSGSLPSWV SLPNLNLNLV ANNFTLEGLD
410 420 430 440 450
NRVLSGLNCL QKNFPCNRGK GIYSDFSINC GGPEIRSVTE AVFEREDEDL
460 470 480 490 500
GPASFVVSAG QRWAASSVGL FAGSSNNIYI STSQSQFVNT LDSELFQSAR
510 520 530 540 550
LSASSLRYYG LGLENGGYTV TLQFAEIQIL GSTSNTWRGL GRRRFDIYVQ
560 570 580 590 600
GRLVEKDFDV RRTAGDSTVR AVQREYKANV SQNHLEIHLF WAGKGTCCIP
610 620 630 640 650
IQGAYGPLIS AVGATPDFTP TVGNRPPSKG KSMTGTIVGV IVGVGLLSII
660 670 680 690 700
SGVVIFIIRK RRKRYTDDEE ILSMDVKPYT FTYSELKSAT QDFDPSNKLG
710 720 730 740 750
EGGFGPVYKG KLNDGREVAV KLLSVGSRQG KGQFVAEIVA ISAVQHRNLV
760 770 780 790 800
KLYGCCYEGE HRLLVYEYLP NGSLDQALFG EKTLHLDWST RYEICLGVAR
810 820 830 840 850
GLVYLHEEAR LRIVHRDVKA SNILLDSKLV PKVSDFGLAK LYDDKKTHIS
860 870 880 890 900
TRVAGTIGYL APEYAMRGHL TEKTDVYAFG VVALELVSGR PNSDENLEDE
910 920 930 940 950
KRYLLEWAWN LHEKGREVEL IDHQLTEFNM EEGKRMIGIA LLCTQTSHAL
960 970 980 990 1000
RPPMSRVVAM LSGDVEVSDV TSKPGYLTDW RFDDTTASSI SGFPLRNTQA
1010 1020 1030
SESFTSFVAP RSEISPRNND ARPMLGAQMN EGR
Note: Derived from EST data. No experimental confirmation available.
Length:1,033
Mass (Da):113,754
Last modified:November 3, 2009 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i2F091890AF9C8467
GO
Isoform 2 (identifier: C0LGH3-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     508-521: YYGLGLENGGYTVT → FYFQHLERFRKTTF
     522-1033: Missing.

Note: No experimental confirmation available.
Show »
Length:521
Mass (Da):57,169
Checksum:i47BF9DDC4F815212
GO
Isoform 3 (identifier: C0LGH3-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     173-184: RLLSISSNNFSG → MTPQPPQSAAFH
     185-1033: Missing.

Note: No experimental confirmation available.
Show »
Length:184
Mass (Da):20,440
Checksum:i8D9BEDA441CAF2AD
GO
Isoform 4 (identifier: C0LGH3-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     96-988: Missing.

Note: No experimental confirmation available.
Show »
Length:140
Mass (Da):15,587
Checksum:iC3E1DDDCDC10FA67
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAF02840 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAG50909 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence ACN59258 differs from that shown. Reason: Frameshift at position 507.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti275D → E in ACN59258 (Ref. 3) Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting. The information stored in this subsection is used to automatically construct alternative protein sequence(s) for display.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_03828596 – 988Missing in isoform 4. 1 PublicationAdd BLAST893
Alternative sequenceiVSP_038286173 – 184RLLSI…NNFSG → MTPQPPQSAAFH in isoform 3. 1 PublicationAdd BLAST12
Alternative sequenceiVSP_038287185 – 1033Missing in isoform 3. 1 PublicationAdd BLAST849
Alternative sequenceiVSP_038288508 – 521YYGLG…GYTVT → FYFQHLERFRKTTF in isoform 2. 1 PublicationAdd BLAST14
Alternative sequenceiVSP_038289522 – 1033Missing in isoform 2. 1 PublicationAdd BLAST512

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC009894 Genomic DNA Translation: AAF02840.1 Sequence problems.
AC069159 Genomic DNA Translation: AAG50909.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE33348.1
BT011697 mRNA Translation: AAS49060.1
BT012256 mRNA Translation: AAS76743.1
AK228283 mRNA Translation: BAF00229.1
FJ708663 mRNA Translation: ACN59258.1 Frameshift.

Protein sequence database of the Protein Information Resource

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PIRi
G96602

NCBI Reference Sequences

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RefSeqi
NP_564709.2, NM_104492.4 [C0LGH3-1]

UniGene gene-oriented nucleotide sequence clusters

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UniGenei
At.42833

Genome annotation databases

Ensembl plant genome annotation project

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EnsemblPlantsi
AT1G56140.1; AT1G56140.1; AT1G56140 [C0LGH3-1]

Database of genes from NCBI RefSeq genomes

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GeneIDi
842066

Gramene; a comparative resource for plants

More...
Gramenei
AT1G56140.1; AT1G56140.1; AT1G56140 [C0LGH3-1]

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G56140

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross_references_section">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

PlantP kinase Classification PPC

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009894 Genomic DNA Translation: AAF02840.1 Sequence problems.
AC069159 Genomic DNA Translation: AAG50909.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE33348.1
BT011697 mRNA Translation: AAS49060.1
BT012256 mRNA Translation: AAS76743.1
AK228283 mRNA Translation: BAF00229.1
FJ708663 mRNA Translation: ACN59258.1 Frameshift.
PIRiG96602
RefSeqiNP_564709.2, NM_104492.4 [C0LGH3-1]
UniGeneiAt.42833

3D structure databases

ProteinModelPortaliC0LGH3
SMRiC0LGH3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G56140.1

PTM databases

iPTMnetiC0LGH3

Proteomic databases

PaxDbiC0LGH3
PRIDEiC0LGH3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G56140.1; AT1G56140.1; AT1G56140 [C0LGH3-1]
GeneIDi842066
GrameneiAT1G56140.1; AT1G56140.1; AT1G56140 [C0LGH3-1]
KEGGiath:AT1G56140

Organism-specific databases

AraportiAT1G56140
TAIRilocus:2011816 AT1G56140

Phylogenomic databases

eggNOGiENOG410IK0I Eukaryota
ENOG410XSG4 LUCA
HOGENOMiHOG000116550
InParanoidiC0LGH3
OMAiFIRHSVW
OrthoDBiEOG0936000Y
PhylomeDBiC0LGH3

Miscellaneous databases

Protein Ontology

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PROi
PR:C0LGH3

Gene expression databases

ExpressionAtlasiC0LGH3 baseline and differential
GenevisibleiC0LGH3 AT

Family and domain databases

Gene3Di3.80.10.10, 2 hits
InterProiView protein in InterPro
IPR011009 Kinase-like_dom_sf
IPR001611 Leu-rich_rpt
IPR032675 LRR_dom_sf
IPR021720 Malectin_dom
IPR000719 Prot_kinase_dom
IPR001245 Ser-Thr/Tyr_kinase_cat_dom
IPR008271 Ser/Thr_kinase_AS
PfamiView protein in Pfam
PF13855 LRR_8, 1 hit
PF11721 Malectin, 1 hit
PF07714 Pkinase_Tyr, 1 hit
SMARTiView protein in SMART
SM00220 S_TKc, 1 hit
SUPFAMiSSF56112 SSF56112, 1 hit
PROSITEiView protein in PROSITE
PS50011 PROTEIN_KINASE_DOM, 1 hit
PS00108 PROTEIN_KINASE_ST, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiY5614_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: C0LGH3
Secondary accession number(s): Q0WRM0
, Q6NLS4, Q9C7J2, Q9SGU0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 3, 2009
Last sequence update: November 3, 2009
Last modified: December 5, 2018
This is version 82 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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