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UniProtKB - B9T6E1 (B9T6E1_RICCO)

Entry version 68 (19 Jan 2022)
Sequence version 1 (24 Mar 2009)
Previous versions | rss
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Protein
Submitted name:

Nuclear receptor binding set domain containing protein 1, nsd, putative

Gene

RCOM_0172980

Organism
Ricinus communis (Castor bean)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri1561 – 1586C3H1-typePROSITE-ProRule annotationAdd BLAST26

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-bindingARBA annotation, ReceptorImported
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Nuclear receptor binding set domain containing protein 1, nsd, putativeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:RCOM_0172980Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRicinus communis (Castor bean)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3988 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › fabids › Malpighiales › Euphorbiaceae › Acalyphoideae › Acalypheae › Ricinus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000008311 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Complete GO annotation on QuickGO ...

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		3988.XP_002533810.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini130 – 196PHD-typeInterPro annotationAdd BLAST67
Domaini360 – 443SWIB/MDM2InterPro annotationAdd BLAST84
Domaini505 – 639Plus3InterPro annotationAdd BLAST135
Domaini837 – 891GYFInterPro annotationAdd BLAST55
Domaini1561 – 1586C3H1-typeInterPro annotationAdd BLAST26

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 40DisorderedSequence analysisAdd BLAST40
Regioni52 – 71DisorderedSequence analysisAdd BLAST20
Regioni95 – 125DisorderedSequence analysisAdd BLAST31
Regioni678 – 703DisorderedSequence analysisAdd BLAST26
Regioni945 – 966DisorderedSequence analysisAdd BLAST22
Regioni982 – 1218DisorderedSequence analysisAdd BLAST237
Regioni1242 – 1292DisorderedSequence analysisAdd BLAST51
Regioni1318 – 1366DisorderedSequence analysisAdd BLAST49
Regioni1381 – 1405DisorderedSequence analysisAdd BLAST25
Regioni1423 – 1457DisorderedSequence analysisAdd BLAST35
Regioni1489 – 1562DisorderedSequence analysisAdd BLAST74

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1 – 23Basic and acidic residuesSequence analysisAdd BLAST23
Compositional biasi1034 – 1048Basic and acidic residuesSequence analysisAdd BLAST15
Compositional biasi1049 – 1107Polar residuesSequence analysisAdd BLAST59
Compositional biasi1115 – 1141Polar residuesSequence analysisAdd BLAST27
Compositional biasi1166 – 1217Polar residuesSequence analysisAdd BLAST52
Compositional biasi1318 – 1347Polar residuesSequence analysisAdd BLAST30
Compositional biasi1489 – 1507Polar residuesSequence analysisAdd BLAST19
Compositional biasi1518 – 1534Basic and acidic residuesSequence analysisAdd BLAST17
Compositional biasi1535 – 1552Polar residuesSequence analysisAdd BLAST18

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri1561 – 1586C3H1-typePROSITE-ProRule annotationAdd BLAST26

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG1081, Eukaryota
KOG1862, Eukaryota
KOG1946, Eukaryota

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		B9T6E1

Family and domain databases

Conserved Domains Database

More...CDDi		cd00072, GYF, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.10.245.10, 1 hit
3.30.1490.40, 1 hit
3.30.40.10, 1 hit
3.90.70.200, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR003169, GYF
IPR035445, GYF-like_dom_sf
IPR004343, Plus-3_dom
IPR036128, Plus3-like_sf
IPR019835, SWIB_domain
IPR036885, SWIB_MDM2_dom_sf
IPR003121, SWIB_MDM2_domain
IPR019786, Zinc_finger_PHD-type_CS
IPR000571, Znf_CCCH
IPR036855, Znf_CCCH_sf
IPR011011, Znf_FYVE_PHD
IPR001965, Znf_PHD
IPR019787, Znf_PHD-finger
IPR013083, Znf_RING/FYVE/PHD

Pfam protein domain database

More...Pfami		View protein in Pfam
PF02213, GYF, 1 hit
PF03126, Plus-3, 1 hit
PF02201, SWIB, 1 hit
PF00642, zf-CCCH, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00444, GYF, 1 hit
SM00249, PHD, 1 hit
SM00719, Plus3, 1 hit
SM00151, SWIB, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF159042, SSF159042, 1 hit
SSF47592, SSF47592, 1 hit
SSF55277, SSF55277, 1 hit
SSF57903, SSF57903, 1 hit
SSF90229, SSF90229, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50829, GYF, 1 hit
PS51360, PLUS3, 1 hit
PS51925, SWIB_MDM2, 1 hit
PS50103, ZF_C3H1, 1 hit
PS01359, ZF_PHD_1, 1 hit
PS50016, ZF_PHD_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B9T6E1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEEQRIQQQQ RRQEQEGGYR PRIQENEQQR LFGNSIQDPE LMTIDQCETM 
        60         70         80         90        100
RELDDSQLVG PPPPPSLPPP AAAATAIVNM VDVEVRSAVK AVDVSTVKRK 
       110        120        130        140        150
RGRPPRIQGK TTGPPSSQPK RKTTTTDDEE DVCFICFDGG SLVLCDRRGC 
       160        170        180        190        200
PKAYHPACIK RDESFFRSKA KWNCGWHICS NCQKASHYMC YTCTYSLCKG 
       210        220        230        240        250
CTKDADYVCV RGNKGLCGTC MRTIMLIENV TVGNTEAVQV DFDDKTSWEY 
       260        270        280        290        300
LFKIYWIFLK GKLSLTVDEL TKAKNPWKGD ELPKAKNSWR GFGSIFAPKE 
       310        320        330        340        350
VHTGELIHGN DEKSPFLDNC YGNVEANHSK RRKTKDQPED LSEQNSVVME 
       360        370        380        390        400
KSVVDKVTPL PEGTMWATKE LLEFVSHMRN GDTSMLSQFD VQALLLDYIK 
       410        420        430        440        450
RNNLRDPRQK SQIICDSRLK NLFGKPRAGH FEMLKLLEYH FLIKEKSPAN 
       460        470        480        490        500
DSVRVGVADA VGSLLEAAGS SDSQMIMGND RRRRTRKKMD ERGPHVNLNP 
       510        520        530        540        550
DDYAAIDVHN INLLYLKRNL MENLMDDTEK FHEKVVGSFV RIRISGGDQK 
       560        570        580        590        600
QDMYRLVQVV GTSKVAESYK VGSRTTDVML EILNLDKKEV VSIDGISNQE 
       610        620        630        640        650
FSEDECRRLR QSIKCGLIKR LKVASHIKDS IIFTNFMCGE IFNLGITRYT 
       660        670        680        690        700
KLQECVEKLD LLQSPKERQR RLLDIPTVHV DPNMNPSYES EEDAGQSSEM 
       710        720        730        740        750
KQGDHMRLRN TGFGRKGIEL NSPLREGDLN DVGNREHKNL ASVCEQTRNV 
       760        770        780        790        800
GTTFYVDRDG TARVHEKVNE SKWRQGGGAF GATNHNISKN QLDIGLGTYD 
       810        820        830        840        850
RNSQAVRTES HPGVASAIIP SSLSSGRELS LNDFETEKLW HYQDPFGKVQ 
       860        870        880        890        900
GPFAMMQLRK WSTSGLFPPD LRVWRIDKKQ DDSILLTDAL VGECTKVPLN 
       910        920        930        940        950
LCNSHLLPQE AAVASNDSEP GFNQTTDASL ADSKRFDHEL KAMHKDETVN 
       960        970        980        990       1000
ADGDDKPVRS NSLGAHCSTW TKPVDVAIPK DGQVQSSSQQ WELSKGGELY 
      1010       1020       1030       1040       1050
ETPLPQATEG HRDEKWSPHP CNADGISHKA TDGQTKIGES DEKQGDSEGH 
      1060       1070       1080       1090       1100
SSQSSGQNWR PQPVDSSSSR WDSNTGCVSM AKSSEKSEQN QEIVVSDLPS 
      1110       1120       1130       1140       1150
PTPKQSHEEL KGQAENKLSV SSSAPVQDSG PSWSTASSLV VGRQLPEVAG 
      1160       1170       1180       1190       1200
EWGGYSPASA KPSVEEWDSN LVSVSSLKPT EGANDHAATP TSGTDKLTNS 
      1210       1220       1230       1240       1250
SPPQPELDTS TWQPLVPEPN EFCSLVDESV SDLLAEVEAM ESLGGLPSPT 
      1260       1270       1280       1290       1300
SKMSCGGELT PGSDNECFSP IEPFSPALDP GKSDALSSTG DIQMPSQLTA 
      1310       1320       1330       1340       1350
ASVLLRLSLT PSQPTVADEP LAVSQMPSQL TGTTKPHRLS QIQPQSIVPD 
      1360       1370       1380       1390       1400
EPLRVSQLPS RSNLSEEPLG LWHTDALNSQ KSFSGHSSSS AEVEGDAKPS 
      1410       1420       1430       1440       1450
DSSVNQWDIQ SEIQPLASSI VNQGEAGSDI QASTPSTVSQ LESGSVTQHR 
      1460       1470       1480       1490       1500
ASSTADTRWG TVKESTNLNQ EGVSQGSTNM VWGTGHGSIQ QQASTTSAIS 
      1510       1520       1530       1540       1550
TGNIGGWGSQ PRYGGDNRFS GQRDHHRNYF QNRDSGYGRD RSSWNRQPTH 
      1560       1570       1580 
GNGGGSFKPP GKGQRVCKFY ESGYCKKGAS CTYLHP
Length:1,586
Mass (Da):174,943
Last modified:March 24, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i67DC04658EFD2B5C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
EQ974601 Genomic DNA Translation: EEF28579.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EQ974601 Genomic DNA Translation: EEF28579.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi3988.XP_002533810.1

Phylogenomic databases

eggNOGiKOG1081, Eukaryota
KOG1862, Eukaryota
KOG1946, Eukaryota
InParanoidiB9T6E1

Family and domain databases

CDDicd00072, GYF, 1 hit
Gene3Di1.10.245.10, 1 hit
3.30.1490.40, 1 hit
3.30.40.10, 1 hit
3.90.70.200, 1 hit
InterProiView protein in InterPro
IPR003169, GYF
IPR035445, GYF-like_dom_sf
IPR004343, Plus-3_dom
IPR036128, Plus3-like_sf
IPR019835, SWIB_domain
IPR036885, SWIB_MDM2_dom_sf
IPR003121, SWIB_MDM2_domain
IPR019786, Zinc_finger_PHD-type_CS
IPR000571, Znf_CCCH
IPR036855, Znf_CCCH_sf
IPR011011, Znf_FYVE_PHD
IPR001965, Znf_PHD
IPR019787, Znf_PHD-finger
IPR013083, Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF02213, GYF, 1 hit
PF03126, Plus-3, 1 hit
PF02201, SWIB, 1 hit
PF00642, zf-CCCH, 1 hit
SMARTiView protein in SMART
SM00444, GYF, 1 hit
SM00249, PHD, 1 hit
SM00719, Plus3, 1 hit
SM00151, SWIB, 1 hit
SUPFAMiSSF159042, SSF159042, 1 hit
SSF47592, SSF47592, 1 hit
SSF55277, SSF55277, 1 hit
SSF57903, SSF57903, 1 hit
SSF90229, SSF90229, 1 hit
PROSITEiView protein in PROSITE
PS50829, GYF, 1 hit
PS51360, PLUS3, 1 hit
PS51925, SWIB_MDM2, 1 hit
PS50103, ZF_C3H1, 1 hit
PS01359, ZF_PHD_1, 1 hit
PS50016, ZF_PHD_2, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB9T6E1_RICCO
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B9T6E1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: January 19, 2022
This is version 68 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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