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UniProtKB - B9JRK7 (B9JRK7_AGRVS)

Entry version 47 (10 Apr 2019)
Sequence version 1 (24 Mar 2009)
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Protein
Submitted name:

Ti-type conjugative transfer relaxase TraA

Gene

traA

Organism
Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Ti-type conjugative transfer relaxase TraAImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:traAImported
Ordered Locus Names:Avi_0682Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiAgrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri311402 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001596 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		311402.Avi_0682

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini17 – 230MobA_MobLInterPro annotationAdd BLAST214
Domaini713 – 754UvrD_C_2InterPro annotationAdd BLAST42
Domaini879 – 963Bep_C_terminalInterPro annotationAdd BLAST85

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG4105F8B Bacteria
COG0507 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000138087

Identification of Orthologs from Complete Genome Data

More...OMAi		MVERTRM

Database of Orthologous Groups

More...OrthoDBi		961809at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR041533 Bep_BID
IPR005053 MobA_MobL
IPR027417 P-loop_NTPase
IPR014136 TraA_Ti
IPR027785 UvrD-like_helicase_C

Pfam protein domain database

More...Pfami		View protein in Pfam
PF17841 Bep_C_terminal, 1 hit
PF03389 MobA_MobL, 1 hit
PF13538 UvrD_C_2, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF52540 SSF52540, 2 hits

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR02768 TraA_Ti, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B9JRK7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAIYHLSSKP IARSGGRSAV AAIAYRTATM LLNELDGLVH DFTRKQGVEH 
        60         70         80         90        100
AEIVLPEGID AAWALDRSAL WNAVEHSEKR KDARLAREFE IALPHELSSL 
       110        120        130        140        150
ERLLMTRDFA RDLANRYGAA VDFAIHQPHE EGDVRNVHAH VTMTTRTVGL 
       160        170        180        190        200
DGLGEKTLIE RENKWLLNHD HPTSHMQLRD IRQDWERLAN RYLVRAGLDV 
       210        220        230        240        250
RIDHRSNLER GLEIEPTEHM GVHASQMDRR GLQVSRTRMD AKAAKRNAAL 
       260        270        280        290        300
IREKPEQVLS ILTGEKSVFD RHDVARALHR YIDDHQAFQN AFAAVMASPA 
       310        320        330        340        350
LVELRPEQNG ELARYSTREM LEIEHAMAAS ADRMSQSPHH GVRRHHVDQA 
       360        370        380        390        400
LAFQNAAIKS MTASSLSLKV ERGELRPVDR ERAIERSGLS DEQRLAVAHI 
       410        420        430        440        450
TGHAQIAAVI GFAGAGKSTM LAAARDAWER QGYRVHGAAL AGKAAEGLEE 
       460        470        480        490        500
SSGIASRTLA SWEYGWQAGK GQLGKGDVLV IDEAGMVGSR QLARVVMEAE 
       510        520        530        540        550
ARGAKLVLVG DHEQLQAIGA GSPFRAIVDH VGAVELSEIR RQSEVWQRQA 
       560        570        580        590        600
SIAFATHRTG DGLAIYADCG AVHFSESRDE VRAALVQDYL EDLEQRSVGS 
       610        620        630        640        650
RIALAHRRVD VRAINADIRA SLQQRGQLTR GEGEQGTLGR ELVYQTNDGI 
       660        670        680        690        700
RSFAPGDRIV LLENNRDLNV KNGMLGTVQA VEPDALQIRL DGAGQNNARV 
       710        720        730        740        750
VSIPVNSYQS FDHGYATTIH KSQGATVDRA FVMASRTMDR HLTYVAMTRH 
       760        770        780        790        800
RHNVKLYASR DELKDMKALS ASMSRSGVKE TTLDYTGVFA ARRGLAEELG 
       810        820        830        840        850
VHSEIAVNRS SERAAERPLA RDSIIDGHAF PPATVQSSAR VKGPLGEKGL 
       860        870        880        890        900
EIPTEKVAPL VPALLSHSRS IEDVALEKAT PHLERAMEAV HSVGRHVYAN 
       910        920        930        940        950
PDSVAAKLIT AIIRNDISRQ ELATAVAEYP EQFGALRGKA GFLGENKERR 
       960        970        980        990       1000
AARSYAKSLS RHVAFAGETW ERRLEMERRS EAWLREKRDI IEVPGLTHRS 
      1010       1020       1030       1040       1050
EALLKQFDAL PQSEKPKFLE ELSQTSEGRR ALEEAKTITA ALELRFGSAD 
      1060       1070       1080       1090       1100
PRNWKRDRLR LGPEVSVKLD QIKDIARIAD RVQRAELTLQ YELKRTLNNG 

LGLEW
Length:1,105
Mass (Da):122,658
Last modified:March 24, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i788F7A200C291EC4
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP000633 Genomic DNA Translation: ACM35484.1

NCBI Reference Sequences

More...RefSeqi		WP_015914911.1, NC_011989.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		ACM35484; ACM35484; Avi_0682

Database of genes from NCBI RefSeq genomes

More...GeneIDi		31494279

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		avi:Avi_0682

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000633 Genomic DNA Translation: ACM35484.1
RefSeqiWP_015914911.1, NC_011989.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi311402.Avi_0682

Genome annotation databases

EnsemblBacteriaiACM35484; ACM35484; Avi_0682
GeneIDi31494279
KEGGiavi:Avi_0682

Phylogenomic databases

eggNOGiENOG4105F8B Bacteria
COG0507 LUCA
HOGENOMiHOG000138087
OMAiMVERTRM
OrthoDBi961809at2

Family and domain databases

InterProiView protein in InterPro
IPR041533 Bep_BID
IPR005053 MobA_MobL
IPR027417 P-loop_NTPase
IPR014136 TraA_Ti
IPR027785 UvrD-like_helicase_C
PfamiView protein in Pfam
PF17841 Bep_C_terminal, 1 hit
PF03389 MobA_MobL, 1 hit
PF13538 UvrD_C_2, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
TIGRFAMsiTIGR02768 TraA_Ti, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB9JRK7_AGRVS
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B9JRK7
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: March 24, 2009
Last modified: April 10, 2019
This is version 47 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteomeImported
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