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Entry version 58 (31 Jul 2019)
Sequence version 2 (11 Dec 2013)
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Protein

SWIM-type domain-containing protein

Gene

POPTR_008G199300

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
SWIM-type domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:POPTR_008G199300Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3694 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006729 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 8

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3694.POPTR_0008s20380.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini716 – 752SWIM-typeInterPro annotationAdd BLAST37

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 21DisorderedSequence analysisAdd BLAST21

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IKWS Eukaryota
ENOG4111ADB LUCA

Identification of Orthologs from Complete Genome Data

More...
OMAi
YEKCIYQ

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR004330 FAR1_DNA_bnd_dom
IPR031052 FHY3/FAR1
IPR018289 MULE_transposase_dom
IPR006564 Znf_PMZ
IPR007527 Znf_SWIM

The PANTHER Classification System

More...
PANTHERi
PTHR31669 PTHR31669, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03101 FAR1, 2 hits
PF10551 MULE, 1 hit
PF04434 SWIM, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00575 ZnF_PMZ, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50966 ZF_SWIM, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B9HMA5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEKRQHRRPP PPPPPLPFEI HTLDLEPDPP GHTQHMYKKG KKDMVFDSIP
60 70 80 90 100
SFFNNIKSSN SDPYSEEYGN AVIVRAYPLG MARANSNFNV EDGRESGVEP
110 120 130 140 150
HKGLEFDSAD VAREFYNVYA TRVGFRTRTG QLYRSRSDGS VSSRRFVCSK
160 170 180 190 200
EGFQLSSRTG CPAFIRVQRR DSGKWVIDQM HKDHNHELGD VEESHPPVLQ
210 220 230 240 250
QKAPMGRKSS VEVSSRKKLK LLAEVDDGQP CSSGSISVKR VRTGADGQPL
260 270 280 290 300
AEPYAGLVFT SADEAYNFYV RYADEAGFKT RIGQLFRSKN DGSITSRRFV
310 320 330 340 350
CSKEGFQHPS RVGCGAFMRI KRQESGTWMV DRLQKDHNHD LEPHTGTHKK
360 370 380 390 400
SSTASKKFID EVNGGLDSLD LLEINNGVHF NSSQGNNIGS EWYRLLLDYF
410 420 430 440 450
QSRQAEDTGF FYSVEVDNGV CMSIFWADGR SRFACSQFGD VIVVDTSYRK
460 470 480 490 500
TNYLVPFATF VGVNHHKQPV LLGCALIANE SKESFIWLFR TWLRAMSGCR
510 520 530 540 550
PKSIIADQDM AIQQAIAHVF PGTRHRFSMW QIREKERENL RSMSTEFNYE
560 570 580 590 600
YEKCIYESQT NAEFNTMWNA LVNKYGLKEN AWLKEMYEKR ESWVPLYLRG
610 620 630 640 650
TFFAGIPMNE SMESFFGTFL NAETPLRDFI ARYEQGLEQR REEERKEDFN
660 670 680 690 700
SSNLQAYLQT KEPIEEQCRR LYTLRVFQIF QKELLQCYNY LGIKSYEEGT
710 720 730 740 750
ISRYSVRRCG NEIEKHMVTF SASNFDVSCS CQMFEFEGVL CRHVLRVFIM
760 770 780 790 800
LDIREIPSCY LLHRWTRNAE HGIVCDVDSG VSFQELKALM VWSLRETACK
810 820 830
YIESGTTSLE KYRLACDTMR EGAKKICRHR
Length:830
Mass (Da):95,699
Last modified:December 11, 2013 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i85A245E236B35465
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CM009297 Genomic DNA Translation: PNT25730.1

NCBI Reference Sequences

More...
RefSeqi
XP_002311819.2, XM_002311783.2

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
PNT25730; PNT25730; POPTR_008G199300v3

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
7469105

Gramene; a comparative resource for plants

More...
Gramenei
PNT25730; PNT25730; POPTR_008G199300v3

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pop:7469105

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM009297 Genomic DNA Translation: PNT25730.1
RefSeqiXP_002311819.2, XM_002311783.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi3694.POPTR_0008s20380.1

Genome annotation databases

EnsemblPlantsiPNT25730; PNT25730; POPTR_008G199300v3
GeneIDi7469105
GrameneiPNT25730; PNT25730; POPTR_008G199300v3
KEGGipop:7469105

Phylogenomic databases

eggNOGiENOG410IKWS Eukaryota
ENOG4111ADB LUCA
OMAiYEKCIYQ

Family and domain databases

InterProiView protein in InterPro
IPR004330 FAR1_DNA_bnd_dom
IPR031052 FHY3/FAR1
IPR018289 MULE_transposase_dom
IPR006564 Znf_PMZ
IPR007527 Znf_SWIM
PANTHERiPTHR31669 PTHR31669, 1 hit
PfamiView protein in Pfam
PF03101 FAR1, 2 hits
PF10551 MULE, 1 hit
PF04434 SWIM, 1 hit
SMARTiView protein in SMART
SM00575 ZnF_PMZ, 1 hit
PROSITEiView protein in PROSITE
PS50966 ZF_SWIM, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB9HMA5_POPTR
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B9HMA5
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 24, 2009
Last sequence update: December 11, 2013
Last modified: July 31, 2019
This is version 58 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteomeImported
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