UniProtKB - B8C2V5 (B8C2V5_THAPS)
Protein
Submitted name:
WD40-repeat protein
Gene
THAPSDRAFT_262521
Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Names & Taxonomyi
Protein namesi | Submitted name: WD40-repeat proteinImported |
Gene namesi | ORF Names:THAPSDRAFT_262521Imported |
Organismi | Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)Imported |
Taxonomic identifieri | 35128 [NCBI] |
Taxonomic lineagei | Eukaryota › Sar › Stramenopiles › Ochrophyta › Bacillariophyta › Coscinodiscophyceae › Thalassiosirophycidae › Thalassiosirales › Thalassiosiraceae › Thalassiosira |
Proteomesi |
|
Subcellular locationi
GO - Cellular componenti
- nucleus Source: GO_Central
- precatalytic spliceosome Source: GO_Central
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 10 – 42 | LisHInterPro annotationAdd BLAST | 33 | |
Domaini | 213 – 410 | WD_REPEATS_REGIONInterPro annotationAdd BLAST | 198 | |
Repeati | 213 – 244 | WDPROSITE-ProRule annotationAdd BLAST | 32 | |
Repeati | 274 – 315 | WDPROSITE-ProRule annotationAdd BLAST | 42 | |
Repeati | 367 – 410 | WDPROSITE-ProRule annotationAdd BLAST | 44 |
Keywords - Domaini
RepeatARBA annotation, WD repeatPROSITE-ProRule annotationARBA annotationPhylogenomic databases
eggNOGi | KOG0275, Eukaryota |
HOGENOMi | CLU_421215_0_0_1 |
InParanoidi | B8C2V5 |
Family and domain databases
Gene3Di | 2.130.10.10, 1 hit |
InterProi | View protein in InterPro IPR006594, LisH IPR015943, WD40/YVTN_repeat-like_dom_sf IPR001680, WD40_repeat IPR019775, WD40_repeat_CS IPR017986, WD40_repeat_dom IPR036322, WD40_repeat_dom_sf |
Pfami | View protein in Pfam PF00400, WD40, 4 hits |
SMARTi | View protein in SMART SM00667, LisH, 1 hit SM00320, WD40, 5 hits |
SUPFAMi | SSF50978, SSF50978, 1 hit |
PROSITEi | View protein in PROSITE PS50896, LISH, 1 hit PS00678, WD_REPEATS_1, 1 hit PS50082, WD_REPEATS_2, 3 hits PS50294, WD_REPEATS_REGION, 1 hit |
i Sequence
Sequence statusi: Complete.
B8C2V5-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSESSTTDIP SADILRLILA HLTESGLHQT CAALREESGL GMAGLFATSK
60 70 80 90 100
GRLVSSAEEG RWGEALEILE GLDVERHRQS FLEDYRLHHD GKSSLDDVER
110 120 130 140 150
RITSLSSLRT SSASNGASTA LLLPVNYYGP SNQTQQKRRS QIAKLLKRLV
160 170 180 190 200
PEVPMQRLAS LLQQSVRWQC HTGVFPTIQR LFQNNDDEDG KISSAIDNCA
210 220 230 240 250
VERIPSRSTQ TIRLGKNSYI ESAIFLPDGR GLVTGSSDGF IEIWGEPISE
260 270 280 290 300
KGGTNINYEN LRTSDLSYQR NDDLMMHDTA VLAMDVSNDG TLLGTTSSDG
310 320 330 340 350
TVCVWKIMDG KLLRKLERAH GGSGGGDKGA AVTCIQFSPD GSKILTGGHD
360 370 380 390 400
STAREFGLLA SRMLKEFRGH RSYVNCCSYA ASGNALVVVT ASADGNVRVW
410 420 430 440 450
DGKTAEPMRE ITPPIPTSNA VSIHTVMHLH SPPQTMIVVP RTDRAYLMSY
460 470 480 490 500
TGAVLRVFTR DDVQGTDFLA ASVSPSNRWL FVAADDGKCV AFDVNTGKEC
510 520 530 540
SGRSEKASDI TGIIHHPFRG LIGGYSNSKG QKRGILTLWK
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CM000642 Genomic DNA Translation: EED92451.1 |
RefSeqi | XP_002290699.1, XM_002290663.1 |
Genome annotation databases
EnsemblProtistsi | EED92451; EED92451; THAPSDRAFT_262521 |
GeneIDi | 7450062 |
KEGGi | tps:THAPSDRAFT_262521 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CM000642 Genomic DNA Translation: EED92451.1 |
RefSeqi | XP_002290699.1, XM_002290663.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 35128.Thaps262521 |
Genome annotation databases
EnsemblProtistsi | EED92451; EED92451; THAPSDRAFT_262521 |
GeneIDi | 7450062 |
KEGGi | tps:THAPSDRAFT_262521 |
Phylogenomic databases
eggNOGi | KOG0275, Eukaryota |
HOGENOMi | CLU_421215_0_0_1 |
InParanoidi | B8C2V5 |
Family and domain databases
Gene3Di | 2.130.10.10, 1 hit |
InterProi | View protein in InterPro IPR006594, LisH IPR015943, WD40/YVTN_repeat-like_dom_sf IPR001680, WD40_repeat IPR019775, WD40_repeat_CS IPR017986, WD40_repeat_dom IPR036322, WD40_repeat_dom_sf |
Pfami | View protein in Pfam PF00400, WD40, 4 hits |
SMARTi | View protein in SMART SM00667, LisH, 1 hit SM00320, WD40, 5 hits |
SUPFAMi | SSF50978, SSF50978, 1 hit |
PROSITEi | View protein in PROSITE PS50896, LISH, 1 hit PS00678, WD_REPEATS_1, 1 hit PS50082, WD_REPEATS_2, 3 hits PS50294, WD_REPEATS_REGION, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | B8C2V5_THAPS | |
Accessioni | B8C2V5Primary (citable) accession number: B8C2V5 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | March 3, 2009 |
Last sequence update: | March 3, 2009 | |
Last modified: | December 2, 2020 | |
This is version 65 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |