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UniProtKB - B8BJ40 (B8BJ40_ORYSI)

Entry version 56 (07 Oct 2020)
Sequence version 1 (03 Mar 2009)
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Protein
Submitted name:

Uncharacterized protein

Gene

OsI_35107

Organism
Oryza sativa subsp. indica (Rice)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processTranscription, Transcription regulationARBA annotation
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:OsI_35107Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. indica (Rice)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39946 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007015 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 11

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		B8BJ40

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		B8BJ40

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini334 – 394DDTInterPro annotationAdd BLAST61
Domaini548 – 595PHD-typeInterPro annotationAdd BLAST48

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni16 – 60DisorderedSequence analysisAdd BLAST45
Regioni261 – 310DisorderedSequence analysisAdd BLAST50
Regioni1068 – 1107DisorderedSequence analysisAdd BLAST40
Regioni1476 – 1502DisorderedSequence analysisAdd BLAST27
Regioni1607 – 1626DisorderedSequence analysisAdd BLAST20

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi282 – 309PolarSequence analysisAdd BLAST28

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationARBA annotation

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_002742_1_0_1

Identification of Orthologs from Complete Genome Data

More...OMAi		SFRPQAY

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.30.40.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR018501, DDT_dom
IPR028942, WHIM1_dom
IPR019786, Zinc_finger_PHD-type_CS
IPR011011, Znf_FYVE_PHD
IPR001965, Znf_PHD
IPR019787, Znf_PHD-finger
IPR013083, Znf_RING/FYVE/PHD

Pfam protein domain database

More...Pfami		View protein in Pfam
PF02791, DDT, 1 hit
PF00628, PHD, 1 hit
PF15612, WHIM1, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00571, DDT, 1 hit
SM00249, PHD, 4 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF57903, SSF57903, 2 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50827, DDT, 1 hit
PS01359, ZF_PHD_1, 1 hit
PS50016, ZF_PHD_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B8BJ40-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEEPMEVSDR ILHASPAAAA AAPATADDAR ETEIAGGIAS ASAAVEDPPA 
        60         70         80         90        100
SVPPASEAAG EGVIAVEHER AAAHPVSETK MDVDEVGTAD AEQAVAPAAG 
       110        120        130        140        150
EVKAEVNGGS IPDKEQDAAA CTPTQVKTEV YENGVQEQGH TVAAVASEVK 
       160        170        180        190        200
MEGCEGGVVD QKPTTTPADG CQMKEEGECL VGRYISRSVA GHGRILLGKV 
       210        220        230        240        250
ASYDGSTGIY SVVFEDGQGE DLELAQLQSQ LVGEENGAFG MKVSCRKRKL 
       260        270        280        290        300
DLLVSSGGAT EVKGPPITRQ RVNESEVSTR PDESQESGSG SDASEDVESS 
       310        320        330        340        350
SNSSNCTKEL PVEHYPPVQV LELPPSSGDI AVPEEAISYL FSVYNFLRSF 
       360        370        380        390        400
SVQLFLSPFG LDDFVSSVNC TTQNTLLDAV HVSLLRALRR HLETKSSEGL 
       410        420        430        440        450
KLASNCLKYL DWTLLDSLTW PAFLLEYLYV MGIIKDLGGR RFGRSVLAIE 
       460        470        480        490        500
YYKLPVTLKL RILQLLCDHV IDSEELKTEL EEREGYSEEM EYEMDSSTFA 
       510        520        530        540        550
EVGSRSVLTR GSKASACKKL DALQNLETAQ NGNNPESAST HASQDGNSDD 
       560        570        580        590        600
CRICGMDGTL VCCDGCPWAY HSRCIGQNKA FLPQGDWFCP ECVVNKLGPT 
       610        620        630        640        650
SSRIERGARG AQLFGIDMCG RSFLGCCNYL LVIGTSSDVE FCARYYNHCD 
       660        670        680        690        700
VVKVVQILAS SDAYTDICRR MTEYWSHLLD IFQNERSKIS KEVGRSLMSQ 
       710        720        730        740        750
SNILSTATPV KANNGSVQAT LKDGQDSKMA VLSQTNAHQV MDNQFTLCSA 
       760        770        780        790        800
NNNEAFRQTP LAKTYVDNAY RNGAFGPSGT SSISHQSMSM VTVMPNRTQA 
       810        820        830        840        850
QPAHGLIRPD LSCGSVIGNG MSRENIRSSI SARADLISPP YKSKPPVQLI 
       860        870        880        890        900
TENMSGGKPA KFSSFRPQAY MNLYNHGNVA ASAAANLAVL KSDEGKAPTS 
       910        920        930        940        950
HLTTNQRKKL AADCALQVKA FSSAALQFVW PSTEKKVMEV PRDRCGWCLA 
       960        970        980        990       1000
CQSSAGGTKK ACFLNMATAN ASKGSARILS GMRLIKNSDS HFPSIVTYLS 
      1010       1020       1030       1040       1050
HMEESLRGLL VGSLQDVQRR QQWYNQLKDA SNCGNIIPLL LELESNIRGV 
      1060       1070       1080       1090       1100
AFSTSWLKLI DDWPVESPSA SAGASRPAAY QKRGTGGRRG RKRSMASESA 
      1110       1120       1130       1140       1150
PVTDDDNSWK EVNWWSGGNV SKRILQRGAL PILTIRKAAR QGGKKRMFSV 
      1160       1170       1180       1190       1200
SYHEGSNFPR RTRQLAWRAC VGLSQSSSQL ALQVRYLDAH IRWKEFIPPD 
      1210       1220       1230       1240       1250
QIPSEGKSVD SDYSVLRNAV VCDKKIVDNK IRYALKFPNQ KHLPVRVTKN 
      1260       1270       1280       1290       1300
ILEAEDNQDG DGKFWFSENH IPLYLLREFE QKAGVSSLPT PGMLDSNCFA 
      1310       1320       1330       1340       1350
NFYQRRVKSS IGDVFFYLLH KGDVYPCTSC KKDVSFRDII KCSSCQGNCH 
      1360       1370       1380       1390       1400
KECTLRSVGS KEGNAASSLT CKLCLQKRSL MLTNYNTNAS FILPQQKSNV 
      1410       1420       1430       1440       1450
HHAVAAPKII FKVGSSHSAE PATKVEAPPI VKVEAQPVVK KETWPVVKME 
      1460       1470       1480       1490       1500
TQPTANVEAQ PTAKVEAFPI SNLATQNNAG AQVQPKTKSK KPKPEKPRKS 
      1510       1520       1530       1540       1550
KKTEEIKYFG LVWKKSTNDK NNNENSGEVF RANDVILKGK DGVGSSIKPT 
      1560       1570       1580       1590       1600
CCLCNKPYCP DFLYVRCERC KKWFHGDALQ LEEEKIFELV SYRCCRCRRR 
      1610       1620       1630       1640       1650
AIPKCPHSDD YKKPEPEYSE QTVATSSQST MLSSEENFAV ADQDPLLASY 
      1660       1670       1680       1690       1700
GRVEPFGAQT MDADLSMNMM SFNPGNQKLS VRRGQNKNCE YVDQSSIHVD 
      1710       1720       1730       1740       1750
DYYIQNQPQG NANINFSHSN EFSLSEADGV DASELLGWDF SQGNTSAAPS 
      1760       1770       1780       1790       1800
DFAANCPWND ISCGSVAGDE YEPQTYFSFT ELLEADDTQF DNTFGMSSSV 
      1810       1820       1830       1840       1850
QDDGDQQGIG FDEMAFMMED GASNMPFPAI DSASDEVACD RCKNPQPPPD 
      1860       1870       1880 
LKCVVCGLQM HRHCSPWEDG EQPSDSADWS CGACREWR
Length:1,888
Mass (Da):206,711
Last modified:March 3, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i165357FB7DC1FAEA
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CM000136 Genomic DNA Translation: EEC67676.1

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		BGIOSGA034498-TA; BGIOSGA034498-PA; BGIOSGA034498

Gramene; a comparative resource for plants

More...Gramenei		BGIOSGA034498-TA; BGIOSGA034498-PA; BGIOSGA034498

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000136 Genomic DNA Translation: EEC67676.1

3D structure databases

SMRiB8BJ40
ModBaseiSearch...

Proteomic databases

PRIDEiB8BJ40

Genome annotation databases

EnsemblPlantsiBGIOSGA034498-TA; BGIOSGA034498-PA; BGIOSGA034498
GrameneiBGIOSGA034498-TA; BGIOSGA034498-PA; BGIOSGA034498

Phylogenomic databases

HOGENOMiCLU_002742_1_0_1
OMAiSFRPQAY

Family and domain databases

Gene3Di3.30.40.10, 2 hits
InterProiView protein in InterPro
IPR018501, DDT_dom
IPR028942, WHIM1_dom
IPR019786, Zinc_finger_PHD-type_CS
IPR011011, Znf_FYVE_PHD
IPR001965, Znf_PHD
IPR019787, Znf_PHD-finger
IPR013083, Znf_RING/FYVE/PHD
PfamiView protein in Pfam
PF02791, DDT, 1 hit
PF00628, PHD, 1 hit
PF15612, WHIM1, 1 hit
SMARTiView protein in SMART
SM00571, DDT, 1 hit
SM00249, PHD, 4 hits
SUPFAMiSSF57903, SSF57903, 2 hits
PROSITEiView protein in PROSITE
PS50827, DDT, 1 hit
PS01359, ZF_PHD_1, 1 hit
PS50016, ZF_PHD_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB8BJ40_ORYSI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B8BJ40
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: October 7, 2020
This is version 56 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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