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UniProtKB - B8A788 (B8A788_ORYSI)

Entry version 45 (07 Oct 2020)
Sequence version 1 (03 Mar 2009)
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Protein

DDT domain-containing protein

Gene

OsI_03220

Organism
Oryza sativa subsp. indica (Rice)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processTranscriptionARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
DDT domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:OsI_03220Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. indica (Rice)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39946 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007015 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		B8A788

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini366 – 425DDTInterPro annotationAdd BLAST60

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 95DisorderedSequence analysisAdd BLAST95
Regioni137 – 209DisorderedSequence analysisAdd BLAST73
Regioni224 – 268DisorderedSequence analysisAdd BLAST45
Regioni634 – 765DisorderedSequence analysisAdd BLAST132
Regioni853 – 876DisorderedSequence analysisAdd BLAST24
Regioni1342 – 1584DisorderedSequence analysisAdd BLAST243

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili803 – 823Sequence analysisAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi31 – 45PolyampholyteSequence analysisAdd BLAST15
Compositional biasi48 – 66PolarSequence analysisAdd BLAST19
Compositional biasi139 – 209PolyampholyteSequence analysisAdd BLAST71
Compositional biasi646 – 669AcidicSequence analysisAdd BLAST24
Compositional biasi727 – 742PolarSequence analysisAdd BLAST16
Compositional biasi748 – 764PolyampholyteSequence analysisAdd BLAST17
Compositional biasi853 – 867PolarSequence analysisAdd BLAST15
Compositional biasi1399 – 1414BasicSequence analysisAdd BLAST16
Compositional biasi1434 – 1449PolarSequence analysisAdd BLAST16
Compositional biasi1471 – 1486PolarSequence analysisAdd BLAST16
Compositional biasi1521 – 1570AcidicSequence analysisAdd BLAST50

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_001241_0_1_1

Identification of Orthologs from Complete Genome Data

More...OMAi		DPLIGVK

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR007759, Asxl_HARE-HTH
IPR018501, DDT_dom
IPR028942, WHIM1_dom
IPR028941, WHIM2_dom

Pfam protein domain database

More...Pfami		View protein in Pfam
PF02791, DDT, 1 hit
PF05066, HARE-HTH, 1 hit
PF15612, WHIM1, 1 hit
PF15613, WSD, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00571, DDT, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50827, DDT, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B8A788-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVGNLPPVHP HAGSRAVHEY QFLPEQPSDR YEGASRSHEG ASRSHYYDTP 
        60         70         80         90        100
VEASNSRMSS HTPGSHLLRG SDEAAPGYAF QGQMSGSGHL PQSGRREVLP 
       110        120        130        140        150
AVPTDYEMIQ SNSDLNSVPV EGQYGISQVA GIENSLLPSE RRAYHDEDGS 
       160        170        180        190        200
RVDRKRKHNE EAKIAKEVEA HERRIRKELE KQDMMKRKRE EQMRKEMERH 
       210        220        230        240        250
DRERRKEEER LLRERQREQE RFLREQRREH ERMEKFMQKQ SRRAEKQRQK 
       260        270        280        290        300
EELRKEKEAA RQKAANERAT ARRIAREYME LMEDERLELM ELAAQSKGLP 
       310        320        330        340        350
SMLSLDSDTL QQLDSFRGML TPFPPEPVRL KEPFSIKPWT VSEDNVGNLL 
       360        370        380        390        400
MTHILSMQMD KQIDLFDTLA SLHQVWKFSI TFADVLGLSS VTFDEFVQSL 
       410        420        430        440        450
HDYDSRLLGE LHIALLKSII KDIEDVSRTP SVALAVNPAG GHPQIVEGAY 
       460        470        480        490        500
AWGFNIRSWQ RHLNVLTWPE ILRQFALSAG FGPQLKKRNA EDVYYRDDNE 
       510        520        530        540        550
GHDGQDVIST LRNGSAAVHA AALMKERGYT HRRRSRHRLT PGTVKFAAFH 
       560        570        580        590        600
VLSLEGSKGL TILEVAERIQ KSGLRDLTTS KTPEASIAAA LSRDTKLFER 
       610        620        630        640        650
TAPSTYCVKS PYRKDPADSE VVLSSAREKI RAFQNVISDS EAEKEANDAE 
       660        670        680        690        700
RDEDSECDDA DDDPDGDDVN IDVGDGKDPL IGVKEQDGVP ITTIVDSTKR 
       710        720        730        740        750
EKEKVDALTQ SSDLTTSGKE APKPSLGKPS SANTSSDSPV RASSEYHEVP 
       760        770        780        790        800
PTDSEDKEID ESNQGESWVH GLAEGDYCDL SVEERLNALV ALVSVANEGN 
       810        820        830        840        850
FIRAVLEERL ESANALKKQM LAEAQLDKRR SKEEFAGRVQ YNSNMNLKAD 
       860        870        880        890        900
VNQENATEST PTPFHNVDKH NDGNAGVVDN NNNEIIDHNS NAANASYERN 
       910        920        930        940        950
GLGQDIAATP DTLSVQQYAY ADKTRSQLRA YIGHRAEQLF VYRSLPLGQD 
       960        970        980        990       1000
RRRNRYWQFS TSASPNDPGS GRIFFECRDG YWRVLDTEEA FDSLVASLDT 
      1010       1020       1030       1040       1050
RGSREAQLHS MLQRIEPTFK EAIKRKKSAV VEQSAGRYLK NGATEMIRAS 
      1060       1070       1080       1090       1100
YRSDFGSPSS NLSGVTSDSA IAYSDSFKIE LGRNDVEKTA ISKRADVFIR 
      1110       1120       1130       1140       1150
WMWRECNDCK LTCAMEYGKK RCSELMHSCN YCYQIYLAEE RHCSSCHKNF 
      1160       1170       1180       1190       1200
KSIHNFSDHA SQCKDKLRTD HNWKMQTADH SVPIGVRLLK LQLSTIEASI 
      1210       1220       1230       1240       1250
PPEAIQPFWT DGYRKSWGVK LHSTTSLEEI FQMLTLLEAA IKRDHLSSEF 
      1260       1270       1280       1290       1300
ETTSELLNLN TQDNPSQNHV GLSGSAAVLP WVPDTTAAIA LRMLDLDSAV 
      1310       1320       1330       1340       1350
SYMQNQKMER NGGDFMKPPS RFVAVKNAQE LDPLETTGLD LFDGRWATGS 
      1360       1370       1380       1390       1400
GRRGRGRGSR GGSRGGRGRS RGGRVPRGIS ISSRIGFKDE NEASRKNTRR 
      1410       1420       1430       1440       1450
GRTRGRGRGR GRRTVRSRQP SEGKGRSIPK ENLLGSFSML SNAKAATVEE 
      1460       1470       1480       1490       1500
SPRSSGADEW GLENRRPYID GDENSSGSQL DQSEDNEENG QPMDEEYDEQ 
      1510       1520       1530       1540       1550
VPDYSRGYSG GSRPHGMIDD DVSEEEDEDA EGDDDGEEDD ADAEMDEDDD 
      1560       1570       1580 
IGDDGEDGGD GGDGVEANAD EDEGGSSYSS EYSD
Length:1,584
Mass (Da):177,724
Last modified:March 3, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i56B277E0AECEA9CF
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CM000126 Genomic DNA Translation: EEC71249.1

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		BGIOSGA004180-TA; BGIOSGA004180-PA; BGIOSGA004180

Gramene; a comparative resource for plants

More...Gramenei		BGIOSGA004180-TA; BGIOSGA004180-PA; BGIOSGA004180

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000126 Genomic DNA Translation: EEC71249.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Proteomic databases

PRIDEiB8A788

Genome annotation databases

EnsemblPlantsiBGIOSGA004180-TA; BGIOSGA004180-PA; BGIOSGA004180
GrameneiBGIOSGA004180-TA; BGIOSGA004180-PA; BGIOSGA004180

Phylogenomic databases

HOGENOMiCLU_001241_0_1_1
OMAiDPLIGVK

Family and domain databases

InterProiView protein in InterPro
IPR007759, Asxl_HARE-HTH
IPR018501, DDT_dom
IPR028942, WHIM1_dom
IPR028941, WHIM2_dom
PfamiView protein in Pfam
PF02791, DDT, 1 hit
PF05066, HARE-HTH, 1 hit
PF15612, WHIM1, 1 hit
PF15613, WSD, 1 hit
SMARTiView protein in SMART
SM00571, DDT, 1 hit
PROSITEiView protein in PROSITE
PS50827, DDT, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB8A788_ORYSI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B8A788
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: October 7, 2020
This is version 45 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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