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UniProtKB - B7ZNF6 (B7ZNF6_MOUSE)

Entry version 65 (31 Jul 2019)
Sequence version 1 (03 Mar 2009)
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Protein
Submitted name:

Catenin delta-2

Gene

Ctnnd2

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Catenin delta-2Imported
Submitted name:
Ctnnd2 proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Ctnnd2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 15

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...MGIi		MGI:1195966 Ctnnd2

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati588 – 621ARMPROSITE-ProRule annotationAdd BLAST34
Repeati632 – 675ARMPROSITE-ProRule annotationAdd BLAST44
Repeati888 – 925ARMPROSITE-ProRule annotationAdd BLAST38

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 50DisorderedSequence analysisAdd BLAST50
Regioni133 – 168DisorderedSequence analysisAdd BLAST36
Regioni181 – 237DisorderedSequence analysisAdd BLAST57
Regioni255 – 308DisorderedSequence analysisAdd BLAST54
Regioni428 – 479DisorderedSequence analysisAdd BLAST52
Regioni1038 – 1105DisorderedSequence analysisAdd BLAST68
Regioni1126 – 1150DisorderedSequence analysisAdd BLAST25

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili55 – 82Sequence analysisAdd BLAST28

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi22 – 50PolarSequence analysisAdd BLAST29
Compositional biasi135 – 168PolarSequence analysisAdd BLAST34
Compositional biasi181 – 209PolarSequence analysisAdd BLAST29
Compositional biasi215 – 229Pro-richSequence analysisAdd BLAST15
Compositional biasi256 – 276PolarSequence analysisAdd BLAST21
Compositional biasi294 – 308PolarSequence analysisAdd BLAST15
Compositional biasi429 – 479PolarSequence analysisAdd BLAST51
Compositional biasi1038 – 1071PolarSequence analysisAdd BLAST34
Compositional biasi1128 – 1145PolarSequence analysisAdd BLAST18

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG1048 Eukaryota
ENOG410Y21Q LUCA

Ensembl GeneTree

More...GeneTreei		ENSGT00940000154952

Database of Orthologous Groups

More...OrthoDBi		233858at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.25.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR000225 Armadillo
IPR028435 Plakophilin/d_Catenin

The PANTHER Classification System

More...PANTHERi		PTHR10372 PTHR10372, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00514 Arm, 4 hits

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00185 ARM, 8 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF48371 SSF48371, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50176 ARM_REPEAT, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.Show allAlign All

B7ZNF6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFARKQSGAA PFGAMPVPDQ PPSASEKNSS LSPGLNTSNG DGSETETTSA 
        60         70         80         90        100
ILASVKEQEL QFERLTRELE AERQIVASQL ERCKLGSETG SMSSISSAEQ 
       110        120        130        140        150
FHWQTQDGQK DIEDELTTGL ELVDSCIRSL QESGILDPQD YSTSERPSLL 
       160        170        180        190        200
SQSALQLNSK PEGSFQYPAS YHSNQTLALG DTAPSQLPAR STQARAAGQS 
       210        220        230        240        250
FSQGTTGRAG HLAGSEPAPP PPPPREPFAP SLGSAFHLPD APPAAAALYY 
       260        270        280        290        300
SSSTLPAPPR GGSPLTTTQG GSPTKLQRGG SAPEGAAYAA PRGSSPKQSP 
       310        320        330        340        350
SRLAKSYSTS SPINIVVSSA GLSPIRVTSP PTVQSTISSS PIHQLSSTIG 
       360        370        380        390        400
TYATLSPTKR LVHASEQYSK HSQELYATAT LQRPGSLAAG SRASYSSQHG 
       410        420        430        440        450
HLAPELRALQ SPEHHIDPIY EDRVYQKPPM RSLSQSQGDP LPPAHTGTFR 
       460        470        480        490        500
TSTAPSSPGV DSVPLQRTGS QHGPQNAAAA TFQRASYAAG PASNYADPYR 
       510        520        530        540        550
QLQYCASVDS PYSKSGPALP PEGTLARSPS IDSIQKDPRE FGWRDPELPE 
       560        570        580        590        600
VIQMLQHQFP SVQSNAAAYL QHLCFGDNKI KAEIRRQGGI QLLVDLLDHR 
       610        620        630        640        650
MTEVHRSACG ALRNLVYGKA NDDNKIALKN CGGIPALVRL LRKTTDLEIR 
       660        670        680        690        700
ELVTGVLWNL SSCDALKMPI IQDALAVLTN AVIIPHSGWE NSPLQDDRKI 
       710        720        730        740        750
QLHSSQVLRN ATGCLRNVSS AGEEARRRMR ECDGLTDALL YVIQSALGSS 
       760        770        780        790        800
EIDSKTVENC VCILRNLSYR LAAETSQGQH MGTDELDGLL CGETNGKDTE 
       810        820        830        840        850
SSGCWGKKKK KKKSQDQWDG VGPLPDCAEP PKGIQMLWHP SIVKPYLTLL 
       860        870        880        890        900
SECSNPDTLE GAAGALQNLA AGSWKWSVYI RAAVRKEKGL PILVELLRID 
       910        920        930        940        950
NDRVVCAVAT ALRNMALDVR NKELIGKYAM RDLVHRLPGG NNSNNSGSKA 
       960        970        980        990       1000
MSDDTVTAVC CTLHEVITKN MENAKALRDA GGIEKLVGIS KSKGDKHSPK 
      1010       1020       1030       1040       1050
VVKAASQVLN SMWQYRDLRS LYKKDGWSQY HFVASSSTIE RDRQRPYSSS 
      1060       1070       1080       1090       1100
RTPSISPVRV SPNNRSASAP ASPREMISLK ERKTDYESAG NNATYHGTKG 
      1110       1120       1130       1140       1150
EHTSRKDTMT AQNTGVSTLY RNSYGAPAED IKQNQVSTQP VPQEPSRKDY 
      1160       1170       1180       1190       1200
ETYQPFPNST RNYDESFFED QVHHRPPASE YTMHLGLKST GNYVDFYSAA 
      1210       1220 
RPYSELNYET SHYPASPDSW V
Length:1,221
Mass (Da):132,358
Last modified:March 3, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i200141729DF577C4
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
O35927CTND2_MOUSE
Catenin delta-2
Ctnnd2 Catnd2, Nprap
1,247Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
E9QKH8E9QKH8_MOUSE
Catenin delta-2
Ctnnd2
1,246Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A2I3BQV7A0A2I3BQV7_MOUSE
Catenin delta-2
Ctnnd2
103Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A2I3BQV6A0A2I3BQV6_MOUSE
Catenin delta-2
Ctnnd2
145Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AC105408 Genomic DNA No translation available.
AC110569 Genomic DNA No translation available.
AC123531 Genomic DNA No translation available.
AC124675 Genomic DNA No translation available.
AC124993 Genomic DNA No translation available.
AC134414 Genomic DNA No translation available.
AC139197 Genomic DNA No translation available.
BC145217 mRNA Translation: AAI45218.1

NCBI Reference Sequences

More...RefSeqi		XP_006520095.1, XM_006520032.3

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSMUST00000226119; ENSMUSP00000154410; ENSMUSG00000022240

Database of genes from NCBI RefSeq genomes

More...GeneIDi		18163

UCSC genome browser

More...UCSCi		uc011zrs.1 mouse

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC105408 Genomic DNA No translation available.
AC110569 Genomic DNA No translation available.
AC123531 Genomic DNA No translation available.
AC124675 Genomic DNA No translation available.
AC124993 Genomic DNA No translation available.
AC134414 Genomic DNA No translation available.
AC139197 Genomic DNA No translation available.
BC145217 mRNA Translation: AAI45218.1
RefSeqiXP_006520095.1, XM_006520032.3

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsembliENSMUST00000226119; ENSMUSP00000154410; ENSMUSG00000022240
GeneIDi18163
UCSCiuc011zrs.1 mouse

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		1501
MGIiMGI:1195966 Ctnnd2

Phylogenomic databases

eggNOGiKOG1048 Eukaryota
ENOG410Y21Q LUCA
GeneTreeiENSGT00940000154952
OrthoDBi233858at2759

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...ChiTaRSi		Ctnnd2 mouse

The Stanford Online Universal Resource for Clones and ESTs

More...SOURCEi		Search...

Family and domain databases

Gene3Di1.25.10.10, 1 hit
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR000225 Armadillo
IPR028435 Plakophilin/d_Catenin
PANTHERiPTHR10372 PTHR10372, 1 hit
PfamiView protein in Pfam
PF00514 Arm, 4 hits
SMARTiView protein in SMART
SM00185 ARM, 8 hits
SUPFAMiSSF48371 SSF48371, 1 hit
PROSITEiView protein in PROSITE
PS50176 ARM_REPEAT, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB7ZNF6_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B7ZNF6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: July 31, 2019
This is version 65 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
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