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UniProtKB - B7LFU0 (B7LFU0_ECO55)

Entry version 51 (07 Apr 2021)
Sequence version 1 (10 Feb 2009)
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Protein
Submitted name:

Uncharacterized protein

Gene

EC55989_3325

Organism
Escherichia coli (strain 55989 / EAEC)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:EC55989_3325Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coli (strain 55989 / EAEC)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri585055 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000746 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei12 – 32HelicalSequence analysisAdd BLAST21
Transmembranei44 – 63HelicalSequence analysisAdd BLAST20

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		B7LFU0

Database of comparative protein structure models

More...ModBasei		Search...

Protein Data Bank in Europe - Knowledge Base

More...PDBe-KBi		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini409 – 725IcmF-relatedInterPro annotationAdd BLAST317
Domaini979 – 1085IcmF_CInterPro annotationAdd BLAST107

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_003353_0_0_6

Identification of Orthologs from Complete Genome Data

More...OMAi		WEQAVQP

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR009612, IcmF-related
IPR010623, IcmF_C

Pfam protein domain database

More...Pfami		View protein in Pfam
PF06761, IcmF-related, 1 hit
PF06744, IcmF_C, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B7LFU0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNKLACLSGR FGRPGIVFIG VAALWWLITR YGAYLGAETR RDQILLLILL 
        60         70         80         90        100
SLGVLFVCYL PVMKKYVQEL TYRRRARKEQ RLPDDEERLA QTPPRYVTVQ 
       110        120        130        140        150
DIRHTLRRQY GRFWGRKIRI LLITGTASEV ELLTPGLTEQ FWQEEQGTLL 
       160        170        180        190        200
LWGGDPSQPE NADWLAALRR LRYRPADGIV WVTSGLSETL SAPLTEDALD 
       210        220        230        240        250
RVSRAVSSCC ERLGWRLPLY VWSLQESPDE RGRITQPVGC LLPAECSSDK 
       260        270        280        290        300
LKAQLQAMLP GLVAQGIQQI CCAPRYYFLL SLAERFRRNI DAVVEPLSVL 
       310        320        330        340        350
LRPYRQLLLA GIVFSPATVG GERSVRHRWR MDNRWEALPE TVQQLPVRLQ 
       360        370        380        390        400
PSRTGHNWRR SLAVMAAILM MAQGTGMVVS FLANRSLVAE VQEQIRPAQN 
       410        420        430        440        450
QQLSPAERLQ ALLNLQKSLA RLQYREEHGA PWYLRAGMNQ NADLLAVVMP 
       460        470        480        490        500
LYAQNAHLLL RDAAAAHLEQ QLRTFIRLPP DSPQRGKMAK AAYDQLRLYL 
       510        520        530        540        550
MLAQPQHMEP AWFSRTLMRE WPQRDGVSAV FWQANGPTLL AYYASGIITH 
       560        570        580        590        600
PQWKLTADEE LVSQSRTLLL RHLGTQNSDA MLYQKMLARV AHQFADMRLT 
       610        620        630        640        650
DMTGDTDVSR LFFTDEVVPG MFTRQAWEEA VLPSIDTVIN ERREEMDWVL 
       660        670        680        690        700
TDGRQKAPSP VSPEALRQRL TTRYFADFGN AWLNFLNSLH LRKAQTLSDV 
       710        720        730        740        750
TEQLTLMADV RQSPLVALMN TLAVQGCTGQ PREAVTDSLV KSARNLLSQE 
       760        770        780        790        800
KQPVAVPESR LHGPLATTFG PVLALMDNQN NSADMLNLQT YLTRVTQVRL 
       810        820        830        840        850
RLQQIAGSSD PQAMMQLLAQ TVLQGKSVDL TDTRDYGSLT AAGLGQEWYG 
       860        870        880        890        900
FGQTVFVRPM EQAWQQVLTP AAESLNARWR TAVVDGWNNA FSGRYPFKNV 
       910        920        930        940        950
SSDASLPLLA KYLNTDTGRI ARFLQNNLSG VLHREGSRWV PDTINTRGLT 
       960        970        980        990       1000
FNPAFLKAIN TLSEIADVAF TTGNAGLHFE LRPGTAAGVM QTTLITDNQK 
      1010       1020       1030       1040       1050
LIYVNQMPVW KRFTWPADTE APGASLSWVS TQAGTRQYAD LPGSWGLIRL 
      1060       1070       1080       1090       1100
LEMARRKAAP GVASGWSLSW QAQDGRMLNY TLRTEAGEGP LVLLKLRNFV 
      1110       1120 
LPETVFELSG TSAFTGNDED AGDTVEETD
Length:1,129
Mass (Da):126,980
Last modified:February 10, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4665979987B2499A
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CU928145 Genomic DNA Translation: CAU99370.1

NCBI Reference Sequences

More...RefSeqi		WP_001037088.1, NC_011748.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		CAU99370; CAU99370; EC55989_3325

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		eck:EC55989_3325

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU928145 Genomic DNA Translation: CAU99370.1
RefSeqiWP_001037088.1, NC_011748.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
6IXHelectron microscopy4.00P/Q/R/S/T/U/V/W/X/Y1-1129[»]
SMRiB7LFU0
ModBaseiSearch...
PDBe-KBiSearch...

Genome annotation databases

EnsemblBacteriaiCAU99370; CAU99370; EC55989_3325
KEGGieck:EC55989_3325

Phylogenomic databases

HOGENOMiCLU_003353_0_0_6
OMAiWEQAVQP

Family and domain databases

InterProiView protein in InterPro
IPR009612, IcmF-related
IPR010623, IcmF_C
PfamiView protein in Pfam
PF06761, IcmF-related, 1 hit
PF06744, IcmF_C, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB7LFU0_ECO55
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B7LFU0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: April 7, 2021
This is version 51 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources
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