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Entry version 51 (28 Mar 2018)
Sequence version 1 (10 Feb 2009)
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Protein
Submitted name:

Collagen triple helix repeat domain protein

Gene

BCAH820_4844

Organism
Bacillus cereus (strain AH820)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
BCER405535:GHSL-4857-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Collagen triple helix repeat domain proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:BCAH820_4844Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacillus cereus (strain AH820)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri405535 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillusBacillus cereus group
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001363 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

CollagenImported

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000085653

Identification of Orthologs from Complete Genome Data

More...
OMAi
SAHIKTE

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008160 Collagen
IPR021201 Leader_pep_exosporium

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01391 Collagen, 2 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR03720 exospor_lead, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B7JSZ0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEGNGGKSKI KSPLNSNFKI LSDLVGPTFP PVPTGMTGIT GSTGATGTTG
60 70 80 90 100
ATGETGPTGS TGATGTTGAT GETGPTGSTG ATGTTGATGE TGPTGSTGAT
110 120 130 140 150
GSTGVTGNTG STGSTGATGT TGATGETGPT GSTGATGSTG VTGNTGSTGS
160 170 180 190 200
TGATGTTGAT GETGATGPTG SIGAMGTTGA TGETGSTGNT GPTGSTGVTG
210 220 230 240 250
STGPTGETGA TGETGSTGNT GPTGETGATG STGVTGNTGP TGETGATGST
260 270 280 290 300
GPTGNTGATG NTGPTGETGA TGSTGVTGNT GATGATGPTG STGATGSTGP
310 320 330 340 350
TGETGVTGNT GPTGETGVTG STGVTGNTGP TGETGVTGST GVTGNTGPTG
360 370 380 390 400
STGATGNTGP TGETGATGST GVTGSTGATG NTGATGNTGA TGSTGPTGNT
410 420 430 440 450
GATGNTGPTG NTGATGVTGS TGVTGNTGPT GATGPTGSTG ATGSTGPTGE
460 470 480 490 500
TGVTGNTGPT GETGVTGSTG VTGNTGPTGS TGATGNTGPT GETGATGSTG
510 520 530 540 550
VTGSTGATGS TGVTGSTGAT GNTGATGNTG ATGSTGPTGN TGATGNTGPT
560 570 580 590 600
GSTGATGNTG PTGSTGATGV TGSTGATGNT GPTGETGATG STGVTGSTGA
610 620 630 640 650
TGSTGVTGST GATGNTGATG STGPTGNTGA TGSTGPTGST GATGNTGPTG
660 670 680 690 700
STGETGATGN TGPTGETGVT GSTGPTGNTG ATGETGVTGP TGSTGVTGST
710 720 730 740 750
GPTGSTGATG NTGATGETGP TGNTGVTGST GPTGETGVTG GTGPTGETGV
760 770 780 790 800
TGSTGPTGST GVTGNTGATG ETGPTGSTGP TGETGVTGNT GPTGETGVTG
810 820 830 840 850
STGVTGNTGP TGSTGATGNT GPTGETGATG STGVTGSTGA TGSTGVTGST
860 870 880 890 900
GATGNTGATG STGPTGNTGA TGNTGPTGET GATGNTGPTG ETGVTGSTGV
910 920 930 940 950
TGNTGPTGST GATGNTGPTG ETGATGSTGV TGSTGATGST GVTGSTGATG
960 970 980 990 1000
NTGATGSTGA TGNTGATGST GATGNTGPTG ETGPTGSTGV TGNTGATGST
1010 1020 1030 1040 1050
GVTGNTGATG ATGSTGPTGS TGVTGSTGAT GSIGATGATG STGPTGSTGA
1060 1070 1080 1090 1100
MGVTGSTGPT GSTGTTGNTG VTGDTGPTGA TGVSTTATYA FANNTSGSVI
1110 1120 1130 1140 1150
SVLLGGTNIP LPNNQNIGPG ITVSGGNTVF TVANAGNYYI AYTINLTAGL
1160 1170 1180 1190 1200
LVSSRITVNG SPLAGTINSP TVATGSFSAT IIASLPAGAA VSLQLFGVVA
1210
LATLSTATPG ATLTIIRLS
Length:1,219
Mass (Da):105,511
Last modified:February 10, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iE67F6117E7EA35D1
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP001283 Genomic DNA Translation: ACK88703.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ACK88703; ACK88703; BCAH820_4844

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
bcu:BCAH820_4844

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001283 Genomic DNA Translation: ACK88703.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACK88703; ACK88703; BCAH820_4844
KEGGibcu:BCAH820_4844

Phylogenomic databases

HOGENOMiHOG000085653
OMAiSAHIKTE

Enzyme and pathway databases

BioCyciBCER405535:GHSL-4857-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR008160 Collagen
IPR021201 Leader_pep_exosporium
PfamiView protein in Pfam
PF01391 Collagen, 2 hits
TIGRFAMsiTIGR03720 exospor_lead, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB7JSZ0_BACC0
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B7JSZ0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: March 28, 2018
This is version 51 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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