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Entry version 43 (16 Jan 2019)
Sequence version 1 (10 Feb 2009)
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Protein
Submitted name:

Predicted protein

Gene

PEPCase_1

Organism
Phaeodactylum tricornutum (strain CCAP 1055/1)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei240PROSITE-ProRule annotation1
Active sitei672PROSITE-ProRule annotation1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Predicted proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:PEPCase_1Imported
ORF Names:PHATRDRAFT_27976Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPhaeodactylum tricornutum (strain CCAP 1055/1)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri556484 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaStramenopilesBacillariophytaBacillariophyceaeBacillariophycidaeNaviculalesPhaeodactylaceaePhaeodactylum
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000759 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 10

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
2850.Phatr27976

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
B7G1G6

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000238648

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
B7G1G6

Identification of Orthologs from Complete Genome Data

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OMAi
GPTHRFI

Database of Orthologous Groups

More...
OrthoDBi
775417at2759

Family and domain databases

HAMAP database of protein families

More...
HAMAPi
MF_00595 PEPcase_type1, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR021135 PEP_COase
IPR022805 PEP_COase_bac/pln-type
IPR018129 PEP_COase_Lys_AS
IPR033129 PEPCASE_His_AS
IPR015813 Pyrv/PenolPyrv_Kinase-like_dom

The PANTHER Classification System

More...
PANTHERi
PTHR30523 PTHR30523, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00311 PEPcase, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00150 PEPCARBXLASE

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51621 SSF51621, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00781 PEPCASE_1, 1 hit
PS00393 PEPCASE_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B7G1G6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLSSSCRRSF LAAKTRLRSC VTTSLSTGCP WSAISSGSTS RHIDRFFSTH
60 70 80 90 100
SSFDEPNPSL FGASPLQAST VSSDATSIPS NEADRDIQLR ADIKVMGSLL
110 120 130 140 150
GRIIQTHEGA EVLEKVETMR GLAKTWRDQG AGRDPSTKQA ADQTFQNLAA
160 170 180 190 200
YAKSFTDAEL FTVSRAFTHF LAIANAAESH HRGRRLKQSR LLSDESSGAL
210 220 230 240 250
YPKPDSVGGV LPSLLAQGHD ADAIYDALTS QTTELVLTAH PTEVNRRTIL
260 270 280 290 300
NKKRRIQRIL TMADQQRQLG ASSVFEQAEL NDALYREISS IWLSDEVSRI
310 320 330 340 350
KPSPETEAEK GTLVLETVLW EAVPTFLRKL DATTREFLGK PLPLDSSPIR
360 370 380 390 400
FASWMGGDRD GNPNVKPDTT RQVCLRNRQK AATLFARNLR TLEAELSLTT
410 420 430 440 450
CSREVREVVG AAREPYRIFL QPMIRKMEAT TDWAAQELAI LQKRRSGDKS
460 470 480 490 500
ASGIASVAST NVEGIYLDQE EFRAELLTIY RSLQETGNEV AASGILTDII
510 520 530 540 550
RNLSSFGLTL IPLDVRQESD RHEEALDAIT RYLGLGSYIQ WDEQTRVSWL
560 570 580 590 600
TTQISSKRPL LRAGVWYEHP DYFSPTAIDT LEISRMIAEQ HEGSLGAYVI
610 620 630 640 650
SQATSASDVL AVLLLQLDAG VKKPLRVAPL FETLDDLNGA ADTMRQLFSL
660 670 680 690 700
PAYMGTIGGK QEVMIGYSDS AKDAGRMAAT WAQYETQETL AKLAKEFGVD
710 720 730 740 750
MTFFHGKGGT VGRGGNPQTF TAIMAHAPKT INGHFRVTEQ GEMISQNFGY
760 770 780 790 800
ADRAERTMDI YTAAVLAEKL SERPKVKDEW RSMMKILSDI SCEAYRQVVR
810 820 830 840 850
KDERFVPYFR SATPELELSN LNIGSRPAKR KATGGVESLR AIPWNFAWTQ
860 870 880 890 900
TRFNLPTWLG VGDAIGQLLK SDRAPLLREL YREARAFQTM VDLVEMVLAK
910 920 930 940 950
SEPAIAAHYD SVLVKDPKAK ELGKEVRQLH MATEEAILDL TEHKKLGENN
960 970 980 990 1000
AVLQRALVVR NPYVDCLNIL QVETLDRLRQ VEEGKEDKVL KDALLTTITG

VANGMGNTG
Length:1,009
Mass (Da):111,877
Last modified:February 10, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC05671AAA863609B
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CM000613 Genomic DNA Translation: EEC47679.1

NCBI Reference Sequences

More...
RefSeqi
XP_002181027.1, XM_002180991.1

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Ptc.18407

Genome annotation databases

Ensembl protists genome annotation project

More...
EnsemblProtistsi
Phatr3_J27976.t1; Phatr3_J27976.p1; Phatr3_J27976

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
7201832

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pti:PHATRDRAFT_27976

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000613 Genomic DNA Translation: EEC47679.1
RefSeqiXP_002181027.1, XM_002180991.1
UniGeneiPtc.18407

3D structure databases

SMRiB7G1G6
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi2850.Phatr27976

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiPhatr3_J27976.t1; Phatr3_J27976.p1; Phatr3_J27976
GeneIDi7201832
KEGGipti:PHATRDRAFT_27976

Phylogenomic databases

HOGENOMiHOG000238648
InParanoidiB7G1G6
OMAiGPTHRFI
OrthoDBi775417at2759

Family and domain databases

HAMAPiMF_00595 PEPcase_type1, 1 hit
InterProiView protein in InterPro
IPR021135 PEP_COase
IPR022805 PEP_COase_bac/pln-type
IPR018129 PEP_COase_Lys_AS
IPR033129 PEPCASE_His_AS
IPR015813 Pyrv/PenolPyrv_Kinase-like_dom
PANTHERiPTHR30523 PTHR30523, 1 hit
PfamiView protein in Pfam
PF00311 PEPcase, 1 hit
PRINTSiPR00150 PEPCARBXLASE
SUPFAMiSSF51621 SSF51621, 1 hit
PROSITEiView protein in PROSITE
PS00781 PEPCASE_1, 1 hit
PS00393 PEPCASE_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB7G1G6_PHATC
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B7G1G6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: January 16, 2019
This is version 43 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteomeImported
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