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Entry version 23 (07 Oct 2020)
Sequence version 1 (20 Jan 2009)
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Protein
Submitted name:

Tat pathway signal sequence domain protein

Gene

DESPIG_01278

Organism
Desulfovibrio piger ATCC 29098
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Tat pathway signal sequence domain proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:DESPIG_01278Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDesulfovibrio piger ATCC 29098Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri411464 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrio
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000003676 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
411464.DESPIG_01278

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini19 – 110LPD22InterPro annotationAdd BLAST92
Domaini634 – 737MuF_CInterPro annotationAdd BLAST104
Domaini819 – 927LPD3InterPro annotationAdd BLAST109

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili1087 – 1114Sequence analysisAdd BLAST28
Coiled coili1456 – 1476Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG1196, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_228889_0_0_7

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR040738, LPD22
IPR040824, LPD3
IPR041131, MuF_C

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF18834, LPD22, 1 hit
PF18798, LPD3, 1 hit
PF18819, MuF_C, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B6WT73-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSQTMPPELF PSHGPSIRAA LEVADADGVT AQRVASARAT ALQLGLPDSV
60 70 80 90 100
VEADLQYAQR EAQARRIEQN SPFALWAARS KERAALARDD TDGLAGVFST
110 120 130 140 150
AKAFGEIRQY EPGFWEALGT YLKEGGEDTA ENIVATVGAI AGKLGANDFA
160 170 180 190 200
DQVERLAKQR EKRRPAPLES NSAVQNYAGD VVRALPQFAG GVLSYIAGGP
210 220 230 240 250
LGAVMFGAAQ TGGSQYRSLR QENVERDRAF MAAAATAGLS APLDALGTGK
260 270 280 290 300
FLNIFKASGA RQIFQNAGIA VGTDFVTEWL QTYPEEAARI WGLAEKNGTT
310 320 330 340 350
LEEGVRLFFD NFWEMTRQGW YEGFVSMPFG LIGGAGKIAA DRRASRDAQA
360 370 380 390 400
FAEQNTVLHD AVEASQTKQI APDYMEDALD HASDVLAQSV YIPAQAALDL
410 420 430 440 450
AGQGRDVLTP LGITLEEARK AAASGVDLEV KLSRVHARLD SAGMTAVNDI
460 470 480 490 500
LRQTPGAPNL RELSLIDVND EVQAALSDAR QRRRRTDAVR QEEQRLVREM
510 520 530 540 550
VPLVGKEAAE IYGKLNTAQA RAFEAAYGVD AAGLMRRRSV GLAGEDTDGD
560 570 580 590 600
ALRQAALYEQ TPMGDAARAS LERDVHDFGV AVDNIVAAGK LPSDPVKMLG
610 620 630 640 650
QTPLVMQLLG RDTVTGKAAA QGGIYAAPHV FDGTHPNMTP EMWKQIPAAM
660 670 680 690 700
ADPIAVFDSD SPAGRAKGDL VFMLELTDAN GATVVVPVAL DVAKGRKQAH
710 720 730 740 750
VNIVKSAYSK ESGGVPSNHW FMRQLKKNAR YVNGQKMEPW LRAAGAASPL
760 770 780 790 800
GSLKDVAATN TSDNRIYTDA DLVNLRQGNA ALYQPSAEAR DLKQRFAAMP
810 820 830 840 850
LIEADSTQWF GPGKAIDADS RNMRKAVHDW ARTAFPQGTT VANADTGWGV
860 870 880 890 900
QVTPSGIKAS LHHGYDELLA RSVPFIPQII ESGIHLDSIE KKPGLMSHIF
910 920 930 940 950
ANKIRLDGQD YVVGFVLRED RTGNRFYDHE LTKIISPDWL KPGRDTSEEA
960 970 980 990 1000
LGHRTNRGIS PDSLNADRFP DGSVVHAARA NRGDVMNILR ERLGVNDGTG
1010 1020 1030 1040 1050
QILFQPDTAG KDRARIRLDS RTAAIRIFKG ADMSSIPHET AHIFVDDLRR
1060 1070 1080 1090 1100
VAADDGSIAR DRLRADLEQS GRDATPFATI LSGEVDAEGA RAMLRDVREE
1110 1120 1130 1140 1150
LASLEDSEAG LRDAAAAAGR GADSASMRED IAAARKQNTE RRRELLPVER
1160 1170 1180 1190 1200
MLSGYVRHLD GLAQARRDMA TLRRFAGMAE DGGLTAEQWR EVQEYAARGF
1210 1220 1230 1240 1250
EQYLGEGRAP VKELDGVFSR MMRWLKNLYA SWRQYVGADL DDDVRRVFDR
1260 1270 1280 1290 1300
LLATDEQIRN DPSLRAALEL EQEFLADAGL TAAERRELED LRDRAEAEVT
1310 1320 1330 1340 1350
ARMDRAVARE RGKRYRAAFA QAKESLQASP FWTFIREVSR RDKPLTDGEA
1360 1370 1380 1390 1400
GTGGINRDSL VEYLGEDMVK DIARKMPRLV NARGRGDTVD SLAMQYPLTD
1410 1420 1430 1440 1450
GDADALANLI YDVIVVQDGS VNKLAARQAE QALAEQDRAI SPEDGLLAGD
1460 1470 1480 1490 1500
AYGQYLEAVE KAMRRLGKDR QAQNEQDAAR RMEQESLPER YYRDLARREV
1510 1520 1530 1540 1550
ADMAVAQLDA QRFVSALRRA LNERSRAVQR GKPVEAVQAM QRARFAFAMM
1560 1570 1580 1590 1600
QEVRKVRELV DTVQKKARKA ARVKPGTYPA AQTEAIRKLV SAFGLPAPQQ
1610 1620 1630 1640 1650
AWDAQSGDMK LRDLVQQSVD DTEAIDLMPL FPDWLLDLAN PDPAAARRGM
1660 1670 1680 1690 1700
ALDWKALRPL EVEQVGNLLD FLVHSGREQS RTGKESLRAR VQAIADEAAA
1710 1720 1730 1740 1750
SMSGMKTNYA SRRDSLGDDL DRGFSSIDTI EWQCRKADGF QNVMGRDGST
1760 1770 1780 1790 1800
EGVMEREVYG PLRAATDRYH ARLNSMHKAV MPHLVRLLQS AKAWEKKYGS
1810 1820 1830 1840 1850
KTLNVRDEKG AVVPVPEAIR QAGDPGWTAE MVIGMALNMG NTGNRERLRS
1860 1870 1880 1890 1900
SYIDGNGKGG LTYDMVSLLL GDDAAATLFE LDAAAMGQMT AGRARRDGIL
1910 1920 1930 1940 1950
SAADWQAIQG VWDVLGSQWA DTQAAHKRLY GFAPQGIEPG AFAVRVGDET
1960 1970 1980 1990 2000
VRLPGGYYPI KYDPRLDMKM RAQEGKEDVL DRSEGIFGIP AARKGFTMGR
2010 2020 2030 2040 2050
VTHTGRSLRL GVQALQKHLV DSARFIELGY DVRMADRIIN NPTFAAEYQR
2060 2070 2080 2090 2100
VFGMQDYDRF RPNLKGLVVD EAVPDSSLLK AAEKARKHLV YYALSMNLNT
2110 2120 2130 2140 2150
ALMQLTAVFP AVGDVGLVNV SRGLAQLGTR GMGLVREVFA ASPYMERRFR
2160 2170 2180 2190 2200
NIDDDLARKA MKFEPGRGMT LIRDGQVYTW EDVANLGMLP IAAADCAVTT
2210 2220 2230 2240 2250
AIWAGAYHKK MKELRGTAGW KMDRDSEYHS QAVAYADKII AQSNPDNDAL
2260 2270 2280 2290 2300
SKSAFARDKG IVRLFNAFSG ATTKFAQRTR YMWQGVKRGR VTKWEFARME
2310 2320 2330 2340 2350
LYDMLLPALA MVVMKGLAQG LFTGEDDDNE ELAKLALSTT MGQFAMAFPV
2360 2370 2380 2390 2400
VGNPAADMLV AAMGAGGGRR AGLSTALDTP LQLAGKMAGL GGKATRGGDI
2410 2420 2430 2440 2450
DGEKLVMSAL DLGSYISKIP VGPVTRRAER GYEQWMKGEG TPLSLIMPRS

GN
Length:2,452
Mass (Da):268,222
Last modified:January 20, 2009 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD4F18E8AA0515BE9
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
ABXU01000029 Genomic DNA Translation: EEB33985.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
EEB33985; EEB33985; DESPIG_01278

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ABXU01000029 Genomic DNA Translation: EEB33985.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi411464.DESPIG_01278

Genome annotation databases

EnsemblBacteriaiEEB33985; EEB33985; DESPIG_01278

Phylogenomic databases

eggNOGiCOG1196, Bacteria
HOGENOMiCLU_228889_0_0_7

Family and domain databases

InterProiView protein in InterPro
IPR040738, LPD22
IPR040824, LPD3
IPR041131, MuF_C
PfamiView protein in Pfam
PF18834, LPD22, 1 hit
PF18798, LPD3, 1 hit
PF18819, MuF_C, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB6WT73_9DELT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B6WT73
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 20, 2009
Last sequence update: January 20, 2009
Last modified: October 7, 2020
This is version 23 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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