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UniProtKB - B6VLD4 (B6VLD4_PHOAA)

Entry version 57 (02 Dec 2020)
Sequence version 1 (16 Dec 2008)
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Protein
Submitted name:

Putative membrane Protein

Gene

PAU_03820

Organism
Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) (Xenorhabdus luminescens (strain 2))
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Putative membrane ProteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:PAU_03820Imported
ORF Names:PA-RVA7-0666Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPhotorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) (Xenorhabdus luminescens (strain 2))Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri553480 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Morganellaceae › Photorhabdus ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002747 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei12 – 31HelicalSequence analysisAdd BLAST20
Transmembranei43 – 60HelicalSequence analysisAdd BLAST18

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		291112.PAU_03820

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini398 – 710IcmF-relatedInterPro annotationAdd BLAST313
Domaini968 – 1072IcmF_CInterPro annotationAdd BLAST105

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		COG3523, Bacteria

Identification of Orthologs from Complete Genome Data

More...OMAi		PWEKSAQ

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR009612, IcmF-related
IPR010623, IcmF_C

Pfam protein domain database

More...Pfami		View protein in Pfam
PF06761, IcmF-related, 1 hit
PF06744, IcmF_C, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B6VLD4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFKAFIARNL GVGLVTNLIA LVLGGLLYFW GARLGLDTPA VKIIVWIVSM 
        60         70         80         90        100
VGVVWLLNLF RDYKQCVPVP DIAAKVSVAS AESSEGPFYF HRLQDHVRHR 
       110        120        130        140        150
YGRFWRRKVR ILMVMGQREQ VEAIAPGLTK QHWLEGESNL LLWGGSLQVA 
       160        170        180        190        200
PDVAQLKALR KLRRRCPLDG VVWVMTEEQL SQRAEIDTAL RMLEKQGQQL 
       210        220        230        240        250
GWQAPVYVWH VQCSLWDQRD RPTQTVGCFL PSESPPPLLT ESLNTLPSQL 
       260        270        280        290        300
AARGMAQALA NIRHDFLLRL AQSLREGGVT RLVRQLTPLL NRPSVWMAGV 
       310        320        330        340        350
MFSLPLAAQP GMTEHGWLVD ASWNGVLEDV RHVRGNAVGF PWEKSAQWGL 
       360        370        380        390        400
IVLAALWGMG SVTSFFANRH QITLSRERVS QVSHRQHSLS DRLLSQHALQ 
       410        420        430        440        450
LELDRLQHRA EAGAPWYSRF GLNQNGVLLR TLWPVYQRNN APLIRDAAAR 
       460        470        480        490        500
VLHQRLADWV NLPPGSPQRC QQMKAAYAQL KAYLMMARPE KADAAFMSRV 
       510        520        530        540        550
LMESWPHRAG VRDGLWQNTG ASLLRFYAQH LPQHPVWKII ADAGLVSEVR 
       560        570        580        590        600
QILLNQQGQR NAEATLYQHL LQQVAHSYGD LSLAQMTGAT DASRLFSTNK 
       610        620        630        640        650
VVPGMFTRQA WEGQVQQAIA AVVASRREAM DWVLSDGGQP MAEAVSPGVL 
       660        670        680        690        700
QARLRARYFR DFAGAWLNFL NSLRWNRVHN LSDTLDQLTL MADVRQSPLI 
       710        720        730        740        750
ALMNTLAYQG ETGQPDEGLS DSLVNTARTL FQKTPPLVID QNRGPQSPME 
       760        770        780        790        800
NTFGPLLSLM GKTPGQALMT ADSTLSLQTF LTRVTRVRLT LQQIANTDDP 
       810        820        830        840        850
QERMQALAQT VFQGKRVDLT DTQSYGSLIA ASLGSDWSGF GQTVFVQPLT 
       860        870        880        890        900
QAWQTVLQPS AASINAQWQA SVVSDWQAAF NGRYPFVDEQ NEASLPVLGQ 
       910        920        930        940        950
FIAADTGRIE QFLQRELGGV LHKEGHYWVA DKVGSQGLLI NPAFLTAINQ 
       960        970        980        990       1000
LSAIADVLFM NGRQGLRFEL RAKPVRDVAE TDLTIDGQRL RYFNQMESWQ 
      1010       1020       1030       1040       1050
RLRWPGESDN PGVVLTWTSV DTGARVFGDY PGEWGLLRWL EQAKVKALDG 
      1060       1070       1080       1090 
GRYRLTFNAP DGLPLSWDLR TEQGKGPLVL LGLKGFRLPA QIFSEKEE
Length:1,098
Mass (Da):123,024
Last modified:December 16, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8A2D359BC19E8806
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
FM162591 Genomic DNA Translation: CAQ85908.1
FM211049 Genomic DNA Translation: CAR66964.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		CAQ85908; CAQ85908; PAU_03820

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		pay:PAU_03820

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM162591 Genomic DNA Translation: CAQ85908.1
FM211049 Genomic DNA Translation: CAR66964.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi291112.PAU_03820

Genome annotation databases

EnsemblBacteriaiCAQ85908; CAQ85908; PAU_03820
KEGGipay:PAU_03820

Phylogenomic databases

eggNOGiCOG3523, Bacteria
OMAiPWEKSAQ

Family and domain databases

InterProiView protein in InterPro
IPR009612, IcmF-related
IPR010623, IcmF_C
PfamiView protein in Pfam
PF06761, IcmF-related, 1 hit
PF06744, IcmF_C, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB6VLD4_PHOAA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B6VLD4
Secondary accession number(s): C7BMM9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: December 2, 2020
This is version 57 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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