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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciOCAR504832:G1GTX-1808-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:OCAR_5895, OCA5_c21230
OrganismiOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5)
Taxonomic identifieri504832 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeOligotropha
Proteomesi
  • UP000007730 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10001441591 – 15450S ribosomal protein L13Add BLAST154

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi504832.OCA5_c21230

Structurei

3D structure databases

ProteinModelPortaliB6JGT5
SMRiB6JGT5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5 Bacteria
COG0102 LUCA
HOGENOMiHOG000225286
KOiK02871
OMAiVLMGKHK
OrthoDBiPOG091H013T

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR005823 Ribosomal_L13_bac-type
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01066 rplM_bact, 1 hit

Sequencei

Sequence statusi: Complete.

B6JGT5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTFSAKPAE VNKKWVIIDA KGLVVGRLAT LVAMRLRGKH LPTYTPHVDC
60 70 80 90 100
GDNVIVINAA QVVLTGRKRD NKMYYNHTGF IGGIKERSAK SILEGRFPER
110 120 130 140 150
VLEKAIERMI PRGPLGRIQM GNLRVYAGAE HPHEAQNPEV VDIASLNRKN

TRAA
Length:154
Mass (Da):17,135
Last modified:December 16, 2008 - v1
Checksum:i65AE8615368304B1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001196 Genomic DNA Translation: ACI93019.1
CP002826 Genomic DNA Translation: AEI06827.1
RefSeqiWP_012563046.1, NC_015684.1

Genome annotation databases

EnsemblBacteriaiACI93019; ACI93019; OCAR_5895
AEI06827; AEI06827; OCA5_c21230
KEGGioca:OCAR_5895
ocg:OCA5_c21230
PATRICifig|504832.7.peg.2244

Similar proteinsi

Entry informationi

Entry nameiRL13_OLICO
AccessioniPrimary (citable) accession number: B6JGT5
Secondary accession number(s): F8BX50
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: December 16, 2008
Last modified: February 28, 2018
This is version 61 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

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