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Entry version 89 (22 Apr 2020)
Sequence version 1 (16 Dec 2008)
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Protein
Submitted name:

GA C20oxidase2

Gene

C20ox2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionOxidoreductaseUniRule annotationSAAS annotation
LigandIronUniRule annotationSAAS annotation, Metal-bindingUniRule annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
GA C20oxidase2Imported
Submitted name:
Gibberellin-20 oxidase-2Imported
Submitted name:
SD1Imported
Submitted name:
SD1-2-proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:C20ox2Imported
Synonyms:OsGA20ox2Imported, osGA20ox2Imported, SD1Imported, SD1-2EImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini224 – 324Fe2OG dioxygenaseInterPro annotationAdd BLAST101

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 23DisorderedSequence analysisAdd BLAST23

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the iron/ascorbate-dependent oxidoreductase family.UniRule annotationSAAS annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0143 Eukaryota
COG3491 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_010119_16_3_1

Identification of Orthologs from Complete Genome Data

More...
OMAi
PPCNSAN

Database of Orthologous Groups

More...
OrthoDBi
755305at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.120.330, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR026992 DIOX_N
IPR027443 IPNS-like
IPR005123 Oxoglu/Fe-dep_dioxygenase

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03171 2OG-FeII_Oxy, 1 hit
PF14226 DIOX_N, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51471 FE2OG_OXY, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B6F2D9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVAEHPTPPQ PHQPPPMDST AGSGIAAPAA AAVCDLRMEP KIPEPFVWPN
60 70 80 90 100
GDARPASAAE LDMPVVDVGV LRDGDAEGLR RAAAQVAAAC ATHGFFQVSE
110 120 130 140 150
HGVDAALARA ALDGASDFFR LPLAEKRRAR RVPGTVSGYT SAHADRFASK
160 170 180 190 200
LPWKETLSFG FHDRAAAPVV ADYFSSTLGP DFAPMGRVYQ KYCEEMKELS
210 220 230 240 250
LTIMELLELS LGVERGYYRE FFADSSSIMR CNYYPPCPEP ERTLGTGPHC
260 270 280 290 300
DPTALTILLQ DDVGGLEVLV DGEWRPVSPV PGAMVINIGD TFMALSNGRY
310 320 330 340 350
KSCLHRAVVN QRRERRSLAF FLCPREDRVV RPPPSAATPQ HYPDFTWADL
360 370 380
MRFTQRHYRA DTRTLDAFTR WLAPPAADAA ATAQVEAAS
Length:389
Mass (Da):42,513
Last modified:December 16, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i01B26E496DF2EAC1
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
JN541465 Genomic DNA Translation: AER45834.1
JN541466 Genomic DNA Translation: AER45835.1
JN541468 Genomic DNA Translation: AER45836.1
JN541469 Genomic DNA Translation: AER45837.1
JN541470 Genomic DNA Translation: AER45838.1
JN541471 Genomic DNA Translation: AER45839.1
JN541472 Genomic DNA Translation: AER45840.1
JN541473 Genomic DNA Translation: AER45841.1
JN541474 Genomic DNA Translation: AER45842.1
JN541513 Genomic DNA Translation: AER45881.1
JN541514 Genomic DNA Translation: AER45882.1
JN541528 Genomic DNA Translation: AER45897.1
JN541529 Genomic DNA Translation: AER45898.1
JN541530 Genomic DNA Translation: AER45899.1
JN541531 Genomic DNA Translation: AER45900.1
JN541532 Genomic DNA Translation: AER45901.1
JN541533 Genomic DNA Translation: AER45902.1
JN541534 Genomic DNA Translation: AER45903.1
JN541535 Genomic DNA Translation: AER45904.1
JN541537 Genomic DNA Translation: AER45906.1
JN541539 Genomic DNA Translation: AER45908.1
KT354862 Genomic DNA Translation: ALF35830.1
AB469068 Genomic DNA Translation: BAG80948.1
AB538265 Genomic DNA Translation: BAJ09474.1
AB538266 Genomic DNA Translation: BAJ09475.1
AB538267 Genomic DNA Translation: BAJ09476.1
AB633592 Genomic DNA Translation: BAK39015.1
AB633593 Genomic DNA Translation: BAK39016.1
AB633594 Genomic DNA Translation: BAK39017.1
AB633595 Genomic DNA Translation: BAK39018.1
AB633596 Genomic DNA Translation: BAK39019.1
AB633597 Genomic DNA Translation: BAK39020.1
AB633598 Genomic DNA Translation: BAK39021.1
AB633599 Genomic DNA Translation: BAK39022.1
AB633600 Genomic DNA Translation: BAK39023.1
AB633601 Genomic DNA Translation: BAK39024.1
AB633602 Genomic DNA Translation: BAK39025.1
AB633603 Genomic DNA Translation: BAK39026.1
AB633604 Genomic DNA Translation: BAK39027.1
AB633605 Genomic DNA Translation: BAK39028.1
AB633606 Genomic DNA Translation: BAK39029.1
AB633607 Genomic DNA Translation: BAK39030.1
AB633608 Genomic DNA Translation: BAK39031.1
AB633609 Genomic DNA Translation: BAK39032.1
AB633625 Genomic DNA Translation: BAK39048.1

NCBI Reference Sequences

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RefSeqi
XP_015627721.1, XM_015772235.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
Os01t0883800-02; Os01t0883800-02; Os01g0883800

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4325003

Gramene; a comparative resource for plants

More...
Gramenei
Os01t0883800-02; Os01t0883800-02; Os01g0883800

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
osa:4325003

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JN541465 Genomic DNA Translation: AER45834.1
JN541466 Genomic DNA Translation: AER45835.1
JN541468 Genomic DNA Translation: AER45836.1
JN541469 Genomic DNA Translation: AER45837.1
JN541470 Genomic DNA Translation: AER45838.1
JN541471 Genomic DNA Translation: AER45839.1
JN541472 Genomic DNA Translation: AER45840.1
JN541473 Genomic DNA Translation: AER45841.1
JN541474 Genomic DNA Translation: AER45842.1
JN541513 Genomic DNA Translation: AER45881.1
JN541514 Genomic DNA Translation: AER45882.1
JN541528 Genomic DNA Translation: AER45897.1
JN541529 Genomic DNA Translation: AER45898.1
JN541530 Genomic DNA Translation: AER45899.1
JN541531 Genomic DNA Translation: AER45900.1
JN541532 Genomic DNA Translation: AER45901.1
JN541533 Genomic DNA Translation: AER45902.1
JN541534 Genomic DNA Translation: AER45903.1
JN541535 Genomic DNA Translation: AER45904.1
JN541537 Genomic DNA Translation: AER45906.1
JN541539 Genomic DNA Translation: AER45908.1
KT354862 Genomic DNA Translation: ALF35830.1
AB469068 Genomic DNA Translation: BAG80948.1
AB538265 Genomic DNA Translation: BAJ09474.1
AB538266 Genomic DNA Translation: BAJ09475.1
AB538267 Genomic DNA Translation: BAJ09476.1
AB633592 Genomic DNA Translation: BAK39015.1
AB633593 Genomic DNA Translation: BAK39016.1
AB633594 Genomic DNA Translation: BAK39017.1
AB633595 Genomic DNA Translation: BAK39018.1
AB633596 Genomic DNA Translation: BAK39019.1
AB633597 Genomic DNA Translation: BAK39020.1
AB633598 Genomic DNA Translation: BAK39021.1
AB633599 Genomic DNA Translation: BAK39022.1
AB633600 Genomic DNA Translation: BAK39023.1
AB633601 Genomic DNA Translation: BAK39024.1
AB633602 Genomic DNA Translation: BAK39025.1
AB633603 Genomic DNA Translation: BAK39026.1
AB633604 Genomic DNA Translation: BAK39027.1
AB633605 Genomic DNA Translation: BAK39028.1
AB633606 Genomic DNA Translation: BAK39029.1
AB633607 Genomic DNA Translation: BAK39030.1
AB633608 Genomic DNA Translation: BAK39031.1
AB633609 Genomic DNA Translation: BAK39032.1
AB633625 Genomic DNA Translation: BAK39048.1
RefSeqiXP_015627721.1, XM_015772235.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblPlantsiOs01t0883800-02; Os01t0883800-02; Os01g0883800
GeneIDi4325003
GrameneiOs01t0883800-02; Os01t0883800-02; Os01g0883800
KEGGiosa:4325003

Phylogenomic databases

eggNOGiKOG0143 Eukaryota
COG3491 LUCA
HOGENOMiCLU_010119_16_3_1
OMAiPPCNSAN
OrthoDBi755305at2759

Family and domain databases

Gene3Di2.60.120.330, 1 hit
InterProiView protein in InterPro
IPR026992 DIOX_N
IPR027443 IPNS-like
IPR005123 Oxoglu/Fe-dep_dioxygenase
PfamiView protein in Pfam
PF03171 2OG-FeII_Oxy, 1 hit
PF14226 DIOX_N, 1 hit
PROSITEiView protein in PROSITE
PS51471 FE2OG_OXY, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB6F2D9_ORYSJ
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B6F2D9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: April 22, 2020
This is version 89 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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