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UniProtKB - B6DVZ3 (B6DVZ3_9POLY)
Protein
Submitted name:
Capsid protein
Gene
VP1
Organism
Merkel cell polyomavirus
Status
Functioni
GO - Molecular functioni
- structural molecule activity Source: InterPro
Keywordsi
Biological process | Host-virus interactionARBA annotation |
Names & Taxonomyi
Protein namesi | Submitted name: Capsid proteinImportedSubmitted name: Capsid protein VP1ImportedSubmitted name: Major capsid proteinImportedSubmitted name: Major capsid protein VP1ImportedSubmitted name: VP1Imported |
Gene namesi | Name:VP1Imported |
Organismi | Merkel cell polyomavirusImported |
Taxonomic identifieri | 493803 [NCBI] |
Taxonomic lineagei | Viruses › Monodnaviria › Shotokuvirae › Cossaviricota › Papovaviricetes › Sepolyvirales › Polyomaviridae › Alphapolyomavirus › |
Proteomesi |
|
Subcellular locationi
- Host nucleus ARBA annotation
- Nucleus ARBA annotation
- Virion ARBA annotation
Keywords - Cellular componenti
VirionARBA annotationInteractioni
Subunit structurei
Homomultimer; disulfide-linked. The virus capsid is composed of 72 icosahedral units, each one composed of five disulfide-linked copies of VP1.
Interacts with minor capsid proteins VP2 and VP3.
ARBA annotationStructurei
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 392 – 423 | DisorderedSequence analysisAdd BLAST | 32 |
Sequence similaritiesi
Belongs to the polyomaviruses coat protein VP1 family.ARBA annotation
Family and domain databases
Gene3Di | 2.60.175.10, 1 hit |
InterProi | View protein in InterPro IPR000662, Capsid_VP1_Polyomavir IPR011222, dsDNA_vir_gr_I_capsid IPR036931, Polyomavir_VP1_sf |
Pfami | View protein in Pfam PF00718, Polyoma_coat, 1 hit |
SUPFAMi | SSF88648, SSF88648, 1 hit |
i Sequence
Sequence statusi: Complete.
B6DVZ3-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MAPKRKASST CKTPKRQCIP KPGCCPNVAS VPKLLVKGGV EVLSVVTGED
60 70 80 90 100
SITQIELYLN PRMGVNSPDL PTTSNWYTYT YDLQPKGSSP DQPIKENLPA
110 120 130 140 150
YSVARVSLPM LNEDITCDTL QMWEAISVKT EVVGISSLIN VHYWDMKRVH
160 170 180 190 200
DYGAGIPVSG VNYHMFAIGG EPLDLQGLVL DYQTEYPKTT NGGPITIETV
210 220 230 240 250
LGRKMTPKNQ GLDPQAKAKL DKDGNYPIEV WCPDPSKNEN SRYYGSIQTG
260 270 280 290 300
SQTPTVLQFS NTLTTVLLDE NGVGPLCKGD GLFISCADIV GFLFKTSGKM
310 320 330 340 350
ALHGLPRYFN VTLRKRWVKN PYPVVNLINS LFSNLMPKVS GQPMEGKDNQ
360 370 380 390 400
VEEVRIYEGS EQLPGDPDIV RFLDKFGQEK TVYPKPSVAP AAVTFQSNQQ
410 420
DKGKAPLKGP QKASQKESQT QEL
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | FJ173815 Genomic DNA Translation: ACI25319.1 HM011543 Genomic DNA Translation: ADE45363.1 HM011546 Genomic DNA Translation: ADE45375.1 HM011547 Genomic DNA Translation: ADE45379.1 HM011549 Genomic DNA Translation: ADE45387.1 HM011550 Genomic DNA Translation: ADE45391.1 HM011551 Genomic DNA Translation: ADE45395.1 HM011553 Genomic DNA Translation: ADE45403.1 HM011554 Genomic DNA Translation: ADE45407.1 HM011555 Genomic DNA Translation: ADE45411.1 HM011556 Genomic DNA Translation: ADE45415.1 HM011557 Genomic DNA Translation: ADE45419.1 JF813002 Genomic DNA Translation: AEM01095.1 JF813003 Genomic DNA Translation: AEM01098.1 JN383838 Genomic DNA Translation: AFC36077.1 JN383840 Genomic DNA Translation: AFC36088.1 JN383841 Genomic DNA Translation: AFC36093.1 JQ479316 Genomic DNA Translation: AFM84440.1 JQ479317 Genomic DNA Translation: AFM84445.1 KC202810 Genomic DNA Translation: AGA03918.1 KJ022619 Genomic DNA Translation: AHN13648.1 KJ128379 Genomic DNA Translation: AHN49701.1 KJ128380 Genomic DNA Translation: AHN49705.1 KJ128381 Genomic DNA Translation: AHN49709.1 KF266963 Genomic DNA Translation: AHW79940.1 KP293741 Genomic DNA Translation: AKK25202.1 KX781279 Genomic DNA Translation: AQM73644.1 MG241581 Genomic DNA Translation: AWG42121.1 MG241582 Genomic DNA Translation: AWG42124.1 MG241592 Genomic DNA Translation: AWG42134.1 MG241598 Genomic DNA Translation: AWG42140.1 AB844262 Genomic DNA Translation: BAN78699.1 LC097008 Genomic DNA Translation: BAV01229.1 FM864207 Genomic DNA Translation: CAR95364.1 FM864210 Genomic DNA Translation: CAR95367.1 FM864211 Genomic DNA Translation: CAR95368.1 FM864212 Genomic DNA Translation: CAR95369.1 |
RefSeqi | YP_009111420.1, NC_010277.2 |
Genome annotation databases
GeneIDi | 10987416 |
KEGGi | vg:10987416 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | FJ173815 Genomic DNA Translation: ACI25319.1 HM011543 Genomic DNA Translation: ADE45363.1 HM011546 Genomic DNA Translation: ADE45375.1 HM011547 Genomic DNA Translation: ADE45379.1 HM011549 Genomic DNA Translation: ADE45387.1 HM011550 Genomic DNA Translation: ADE45391.1 HM011551 Genomic DNA Translation: ADE45395.1 HM011553 Genomic DNA Translation: ADE45403.1 HM011554 Genomic DNA Translation: ADE45407.1 HM011555 Genomic DNA Translation: ADE45411.1 HM011556 Genomic DNA Translation: ADE45415.1 HM011557 Genomic DNA Translation: ADE45419.1 JF813002 Genomic DNA Translation: AEM01095.1 JF813003 Genomic DNA Translation: AEM01098.1 JN383838 Genomic DNA Translation: AFC36077.1 JN383840 Genomic DNA Translation: AFC36088.1 JN383841 Genomic DNA Translation: AFC36093.1 JQ479316 Genomic DNA Translation: AFM84440.1 JQ479317 Genomic DNA Translation: AFM84445.1 KC202810 Genomic DNA Translation: AGA03918.1 KJ022619 Genomic DNA Translation: AHN13648.1 KJ128379 Genomic DNA Translation: AHN49701.1 KJ128380 Genomic DNA Translation: AHN49705.1 KJ128381 Genomic DNA Translation: AHN49709.1 KF266963 Genomic DNA Translation: AHW79940.1 KP293741 Genomic DNA Translation: AKK25202.1 KX781279 Genomic DNA Translation: AQM73644.1 MG241581 Genomic DNA Translation: AWG42121.1 MG241582 Genomic DNA Translation: AWG42124.1 MG241592 Genomic DNA Translation: AWG42134.1 MG241598 Genomic DNA Translation: AWG42140.1 AB844262 Genomic DNA Translation: BAN78699.1 LC097008 Genomic DNA Translation: BAV01229.1 FM864207 Genomic DNA Translation: CAR95364.1 FM864210 Genomic DNA Translation: CAR95367.1 FM864211 Genomic DNA Translation: CAR95368.1 FM864212 Genomic DNA Translation: CAR95369.1 |
RefSeqi | YP_009111420.1, NC_010277.2 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
GeneIDi | 10987416 |
KEGGi | vg:10987416 |
Family and domain databases
Gene3Di | 2.60.175.10, 1 hit |
InterProi | View protein in InterPro IPR000662, Capsid_VP1_Polyomavir IPR011222, dsDNA_vir_gr_I_capsid IPR036931, Polyomavir_VP1_sf |
Pfami | View protein in Pfam PF00718, Polyoma_coat, 1 hit |
SUPFAMi | SSF88648, SSF88648, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | B6DVZ3_9POLY | |
Accessioni | B6DVZ3Primary (citable) accession number: B6DVZ3 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | November 25, 2008 |
Last sequence update: | November 25, 2008 | |
Last modified: | September 29, 2021 | |
This is version 48 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |