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Protein
Submitted name:

THO complex subunit 6 homolog

Gene

THOC6

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
THO complex subunit 6 homologImported
Gene namesi
Name:THOC6Imported
Synonyms:thoc6Imported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo
Proteomesi
  • UP000087266 Componenti: Genome assembly

Structurei

3D structure databases

ProteinModelPortaliB5XF26
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini106 – 189WD_REPEATS_REGIONInterPro annotationAdd BLAST84
Repeati148 – 189WDPROSITE-ProRule annotationAdd BLAST42

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Phylogenomic databases

HOVERGENiHBG079643
KOiK13175

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 1 hit
SMARTiView protein in SMART
SM00320 WD40, 3 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 1 hit
PS50294 WD_REPEATS_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

B5XF26-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGPVEHLHMS VFSQSFSPCG RFLAAGNNYG EIVVFSLSSA LSPDATDLSQ
60 70 80 90 100
KPILTFTAHE GPVFSLLSTD SHLLSAGNGE ISAWSWAELI KRNTKAAWTK
110 120 130 140 150
RPNYKSSLEI PEINAMTINP TENSLVIGGG DNNIHIMDLE SGVFKSVLQG
160 170 180 190 200
HTDYIHCLSV REREGEILSG SEDGAVRIWD YRTGQSVHCI EVYKYEECAR
210 220 230 240 250
PQYGKWISCL TTDSDWMLCG GGPSLSLWHL RSMSPTSIFP LSGCQRQANF
260 270 280 290 300
YQDMILSVGE GQCVSHCLLG GEVKAQIPCT PHSLNTLALN LNSTEHRVLT
310 320
VGGSSHQMDV FTNLSYRTFS LSF
Length:323
Mass (Da):35,487
Last modified:November 25, 2008 - v1
Checksum:iF8EE19EA7A5BB9D6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT049645 mRNA Translation: ACI69446.1
RefSeqiNP_001134914.1, NM_001141442.1
UniGeneiSsa.1326

Genome annotation databases

GeneIDi100196413
KEGGisasa:100196413

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT049645 mRNA Translation: ACI69446.1
RefSeqiNP_001134914.1, NM_001141442.1
UniGeneiSsa.1326

3D structure databases

ProteinModelPortaliB5XF26
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100196413
KEGGisasa:100196413

Organism-specific databases

CTDi79228

Phylogenomic databases

HOVERGENiHBG079643
KOiK13175

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 1 hit
SMARTiView protein in SMART
SM00320 WD40, 3 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 1 hit
PS50294 WD_REPEATS_REGION, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiB5XF26_SALSA
AccessioniPrimary (citable) accession number: B5XF26
Entry historyiIntegrated into UniProtKB/TrEMBL: November 25, 2008
Last sequence update: November 25, 2008
Last modified: February 28, 2018
This is version 40 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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