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Protein

Reticulon-like protein

Gene

ret-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Reticulon-like proteinUniRule annotation
Gene namesi
Name:ret-1Imported
ORF Names:CELE_W06A7.3Imported, W06A7.3Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiW06A7.3g ; CE43037 ; WBGene00004336 ; ret-1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei312 – 328HelicalUniRule annotationAdd BLAST17
Transmembranei417 – 443HelicalUniRule annotationAdd BLAST27

Keywords - Cellular componenti

Endoplasmic reticulumUniRule annotation, Membrane

PTM / Processingi

Proteomic databases

EPDiB5U8N2
PeptideAtlasiB5U8N2

Expressioni

Gene expression databases

BgeeiWBGene00004336
ExpressionAtlasiB5U8N2 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliB5U8N2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini299 – 494ReticulonInterPro annotationAdd BLAST196

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili29 – 49Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixUniRule annotation

Phylogenomic databases

eggNOGiKOG1792 Eukaryota
ENOG410XPKH LUCA
GeneTreeiENSGT00390000009934

Family and domain databases

InterProiView protein in InterPro
IPR003388 Reticulon
PfamiView protein in Pfam
PF02453 Reticulon, 1 hit
PROSITEiView protein in PROSITE
PS50845 RETICULON, 1 hit

Sequencei

Sequence statusi: Complete.

B5U8N2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSHHNDVIE KNYFNDNAPT AALLESPIAE EARKLVQDAV ESASEYKKQA
60 70 80 90 100
VDSGDEIGRE LLDNVEQKIE QVKEPIVDSL HKAYDGVGDF VHETVPNAVD
110 120 130 140 150
DFVREAEKQL PESPVPEKIE TPEPLVDIHD TVDKVHDEVD NFLRREPTPP
160 170 180 190 200
FETDDVAPLS DDKPQFGNQT PEEDETTFDR KGPLTIPEEV EKAAAAQNND
210 220 230 240 250
LDDFDPLVTS NTGAAFGAAV GAAAAVESLT EEEMFGHQKF ETVPRPPTPP
260 270 280 290 300
KDISDEDVKP STVNLGPSHH HSHPSSPHHS ILKHHGDAWI DFKTVPPCVL
310 320 330 340 350
DVIYWRDAKK SAIVLSLALL VLFVLAKYPL LTVVTYSLLL ALGAAAGFRV
360 370 380 390 400
FKKVEAQIKK TDSEHPFSEI LAQDLTLPQE KVHAQADVFV EHATCIANKL
410 420 430 440 450
KKLVFVESPL ESIKFGLVLW SLTYIASWFS GFTLAILGLL GVFSVPKVYE
460 470 480 490
SNQEAIDPHL ATISGHLKNV QNIIDEKLPF LRSAPVAAEE KKDQ
Length:494
Mass (Da):54,516
Last modified:November 4, 2008 - v1
Checksum:iB8D128C6CF1CCFAF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA Translation: CAR64686.1
RefSeqiNP_001129910.1, NM_001136438.2
UniGeneiCel.2009

Genome annotation databases

EnsemblMetazoaiW06A7.3g.1; W06A7.3g.1; WBGene00004336
W06A7.3g.2; W06A7.3g.2; WBGene00004336
W06A7.3g.3; W06A7.3g.3; WBGene00004336
GeneIDi179981

Similar proteinsi

Entry informationi

Entry nameiB5U8N2_CAEEL
AccessioniPrimary (citable) accession number: B5U8N2
Entry historyiIntegrated into UniProtKB/TrEMBL: November 4, 2008
Last sequence update: November 4, 2008
Last modified: July 18, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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