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Entry version 84 (18 Sep 2019)
Sequence version 1 (04 Nov 2008)
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Protein
Submitted name:

SMAll

Gene

sma-9

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
SMAllImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:sma-9Imported
ORF Names:CELE_T05A10.1Imported, T05A10.1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCaenorhabditis elegansImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri6239 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaRhabditomorphaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001940 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome X

Organism-specific databases

WormBase

More...
WormBasei
T05A10.1m ; CE42955 ; WBGene00004862 ; sma-9

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
B5U8M3

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
B5U8M3

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
WBGene00004862 Expressed in 5 organ(s), highest expression level in pharyngeal muscle cell (C elegans)

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
B5U8M3 baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

Protein interaction database and analysis system

More...
IntActi
B5U8M3, 37 interactors

STRING: functional protein association networks

More...
STRINGi
6239.T05A10.1m

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1470 – 1497C2H2-typeInterPro annotationAdd BLAST28
Domaini1498 – 1527C2H2-typeInterPro annotationAdd BLAST30
Domaini1723 – 1750C2H2-typeInterPro annotationAdd BLAST28
Domaini1757 – 1788C2H2-typeInterPro annotationAdd BLAST32
Domaini1813 – 1842C2H2-typeInterPro annotationAdd BLAST30

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 20DisorderedSequence analysisAdd BLAST20
Regioni340 – 367DisorderedSequence analysisAdd BLAST28
Regioni517 – 576DisorderedSequence analysisAdd BLAST60
Regioni606 – 640DisorderedSequence analysisAdd BLAST35
Regioni735 – 777DisorderedSequence analysisAdd BLAST43
Regioni1346 – 1372DisorderedSequence analysisAdd BLAST27
Regioni2075 – 2097DisorderedSequence analysisAdd BLAST23
Regioni2209 – 2232DisorderedSequence analysisAdd BLAST24

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili67 – 96Sequence analysisAdd BLAST30
Coiled coili143 – 207Sequence analysisAdd BLAST65
Coiled coili216 – 268Sequence analysisAdd BLAST53
Coiled coili377 – 406Sequence analysisAdd BLAST30

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi522 – 576PolarSequence analysisAdd BLAST55
Compositional biasi608 – 640PolarSequence analysisAdd BLAST33
Compositional biasi1348 – 1365PolarSequence analysisAdd BLAST18
Compositional biasi2081 – 2097PolyampholyteSequence analysisAdd BLAST17
Compositional biasi2210 – 2232PolarSequence analysisAdd BLAST23

Keywords - Domaini

Coiled coilSequence analysis, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1721 Eukaryota
COG5048 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000021148

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
B5U8M3

Identification of Orthologs from Complete Genome Data

More...
OMAi
WDISTKI

Database of Orthologous Groups

More...
OrthoDBi
180157at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003604 Matrin/U1-like-C_Znf_C2H2
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00096 zf-C2H2, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00355 ZnF_C2H2, 8 hits
SM00451 ZnF_U1, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF57667 SSF57667, 3 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 7 hits
PS50157 ZINC_FINGER_C2H2_2, 5 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 12 potential isoforms that are computationally mapped.Show allAlign All

B5U8M3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAFAPGSGGG GAPPGQQPAQ MMMPQNISAE TYHRLNQVQR EQLNHQRLLQ
60 70 80 90 100
AQLQTNGPGS VSQQQQASQQ QQQVQHVQQQ QQSQQQQQQV ASQQNQPQLQ
110 120 130 140 150
MNAQILQALS TPQGQNLVNM LLMQQALNAQ QTDTQNPQQI MQHQLAQQQA
160 170 180 190 200
QQAQQAQQAQ QARQQAEQQA QAQARHQAEQ QAQQQAQQQA QARQQEQQAQ
210 220 230 240 250
LAAIQQQVTP QQFAQILHMQ QQLQQQQFQQ QQLQQQQLQQ QQLQQQQLQQ
260 270 280 290 300
QQLQQQQLQQ VLQISQAQQQ AQQAQHVQSR QMQPSQQSQV QAQLQQQQQL
310 320 330 340 350
QQQQAQQLSQ QQAQQQQQLQ QLQLQQFLQQ QQQLHQQRAA AQQAQAQNNA
360 370 380 390 400
SQQRPSVAST PALSSTPQLN DLTQTMQAQL QQQLLLQQQQ AQAQQAQQAQ
410 420 430 440 450
QAQLAQQAQQ QQQGQSQNRT VSQALQYIQS MQLQQRADGT PNAESQEERL
460 470 480 490 500
AQMLNEQQQR MLQNQAREAQ HRQLLISSTP APRGGITMGT PIGIARREEQ
510 520 530 540 550
PVPSTVAVTT APAAVRTPVA VPPMKQNSNP SMNPSSTSTS ASATSSHQIL
560 570 580 590 600
APSLSKPLEQ PSSSKAASSG NESMSDHISR IISENEVILQ GDPVIRKKRP
610 620 630 640 650
YHRQIGAQSS VDHDSNSGGS TRTSPGPKDS RMLQAASRSQ SLFELSGSKH
660 670 680 690 700
FMGSLTSGQP LLRPIQAHND PNYTPECIYC KLTFPNEAGL QAHEVVCGKK
710 720 730 740 750
KELEKAQIAQ EGNPHSALKR RHTHQDATLA MHSPLAAHTP SNMPGPSEPA
760 770 780 790 800
IKLKKDDSTE LDGTSKPDAL QSSSSFPRSL PKEWEQHMLT LQNLAAIIPP
810 820 830 840 850
FVQAFLAKVL QTKLTMVSSG TLTHIYENYN ISPICVKQFL HFASQLTDQQ
860 870 880 890 900
LEEMTVESEK QYLENAEEYQ AKGIIQALPC DNLEVTEMLK QQETIMKGQV
910 920 930 940 950
PDLLVSTQAV LHHCSGKRDN KDPSKNFVMI KLLHANGKDI TEIPMKAETD
960 970 980 990 1000
LDECNARFVY QMREFQKINN MNDRLIEVLK TDPAAAATPL FQVAREQSAS
1010 1020 1030 1040 1050
VKFLIRQTGM VHLTIVASVA KRLGMSSMQQ DVPESNQIPN GIIAFDGVQI
1060 1070 1080 1090 1100
KQEPEDPPGD DDDDDDDCII EVVDEDQKQH IAMLTAAASG QDIGIGGQFQ
1110 1120 1130 1140 1150
KVTQNLEPAI VNQQSIVNHG DSIVNNASIP IANNAPVQIV QNGGPMQHEV
1160 1170 1180 1190 1200
VAMPVQLKLE DLRLEPQTSG DTDKPYWLVI NGDIGGRPSF MTTAGMTSRT
1210 1220 1230 1240 1250
HRTRNITSET YVTVPRQQPM FAVQDGTLSM YAKWNVPVHN DAETKMNLSF
1260 1270 1280 1290 1300
MGMVSLRRRT GQQKFFKYTT ANKDQGHYRM THSSFWDIST KIRDRQASMS
1310 1320 1330 1340 1350
EEKTPEESVD YDAQFIERLV GGTYTNTDLQ GPSNAPVTIP VLVAPEDSTS
1360 1370 1380 1390 1400
AEPSTSGQSL LMRSPRPQSP PLRDIKMDLS DDDYSATDLA TTCKLEPKQE
1410 1420 1430 1440 1450
SFEDVKDVKR ENSPDARPTV IISDDAGRIR RERFANKYIS RIRPKHDQII
1460 1470 1480 1490 1500
GGHRTDEVYV YVRGRGRGRY ICDRCGIRCK KPSMLKKHIK SHTDVRAFNC
1510 1520 1530 1540 1550
TACNFSFKTK GNLTKHLSSK THQRRISNIQ AGNDSDGTTP STSSMMNMDD
1560 1570 1580 1590 1600
GYHRNQPLFD DYDNNSSDEE DYDHLNRMQA EHKFKFGQEH ILFERTAHTP
1610 1620 1630 1640 1650
PTRWCLVEAQ NDHYWPSPDR RSCMSAPPVA MQRDFDDRAM TPVSGANSPY
1660 1670 1680 1690 1700
LSQQVHSPMS TSSQSNIILD IPNNQKSNCS SVSNVSPSNS QNFQSLSTVP
1710 1720 1730 1740 1750
TCASSSSNVL VPNVNFLQKD ETLKCDQCDR TFRKISDLTL HQHTHNIEMQ
1760 1770 1780 1790 1800
QSKNRMYQCS ECKIPIRTKA QLQKHLERNH GVHMDESVTA CIDPLASTQS
1810 1820 1830 1840 1850
VLGGPSTSNP RSFMCVDCDI GFRKHGILAK HLRSKTHVMK LESLQRLPVD
1860 1870 1880 1890 1900
TLSLITKKDN GACLNDIDTT DCEKARISLL AIVEKLRNEA DKDEQGSVVP
1910 1920 1930 1940 1950
TTSIPAPQPV ALTPEMIRAL ANAQTPVTAS MTNTPSTAQF PVGVVSTPSV
1960 1970 1980 1990 2000
FPTPNPSSPL ESSSMQFRKK AVLDSATHAN DMPRTILRIS EIPSSLPVNH
2010 2020 2030 2040 2050
QLHRDLSFLA HTTSRSESSI TSPIVSSSTN FSYRKRSESS LSGSSPTHTK
2060 2070 2080 2090 2100
KLMVWNPPLA EPSFYSPKAA LHPLSTDKAH ASESLSDRLH NKRPRPIPDN
2110 2120 2130 2140 2150
TKCQICADEF STPIELQVHL HVDHVRMMDG AEYKCPRKFC GLNYESLDSL
2160 2170 2180 2190 2200
RAHVTAHYET DRQKLLEEKV LLAEADFPID NSKIEKLNSP KKESMNKFTT
2210 2220 2230
PFKAISDHHE LYAQTQQGAG SSTSNQSPKA AN
Length:2,232
Mass (Da):248,952
Last modified:November 4, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD52E72B85BCB7F2B
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 12 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q22190Q22190_CAEEL
SMAll
sma-9 CELE_T05A10.1, T05A10.1
2,066Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q7JM45Q7JM45_CAEEL
SMAll
sma-9 CELE_T05A10.1, T05A10.1
1,888Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
B5U8M2B5U8M2_CAEEL
SMAll
sma-9 CELE_T05A10.1, T05A10.1
2,173Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q7JM42Q7JM42_CAEEL
SMAll
sma-9 CELE_T05A10.1, T05A10.1
2,048Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q7JM44Q7JM44_CAEEL
SMAll
sma-9 CELE_T05A10.1, T05A10.1
2,134Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q7JM43Q7JM43_CAEEL
SMAll
sma-9 CELE_T05A10.1, T05A10.1
2,101Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q7JM46Q7JM46_CAEEL
SMAll
sma-9 CELE_T05A10.1, T05A10.1
1,927Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q7JM47Q7JM47_CAEEL
SMAll
sma-9 CELE_T05A10.1, T05A10.1
1,509Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
Q7JM48Q7JM48_CAEEL
SMAll
sma-9 CELE_T05A10.1, T05A10.1
1,692Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
G5ED62G5ED62_CAEEL
SMA-9 class IIb
sma-9 CELE_T05A10.1, T05A10.1
537Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
There are more potential isoformsShow all

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
BX284606 Genomic DNA Translation: CAR64679.1

NCBI Reference Sequences

More...
RefSeqi
NP_001129936.1, NM_001136464.2

Genome annotation databases

Ensembl metazoan genome annotation project

More...
EnsemblMetazoai
T05A10.1m.1; T05A10.1m.1; WBGene00004862

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
181271

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA Translation: CAR64679.1
RefSeqiNP_001129936.1, NM_001136464.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

IntActiB5U8M3, 37 interactors
STRINGi6239.T05A10.1m

Proteomic databases

EPDiB5U8M3
PaxDbiB5U8M3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiT05A10.1m.1; T05A10.1m.1; WBGene00004862
GeneIDi181271

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
181271
WormBaseiT05A10.1m ; CE42955 ; WBGene00004862 ; sma-9

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
HOGENOMiHOG000021148
InParanoidiB5U8M3
OMAiWDISTKI
OrthoDBi180157at2759

Gene expression databases

BgeeiWBGene00004862 Expressed in 5 organ(s), highest expression level in pharyngeal muscle cell (C elegans)
ExpressionAtlasiB5U8M3 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR003604 Matrin/U1-like-C_Znf_C2H2
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 2 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 8 hits
SM00451 ZnF_U1, 2 hits
SUPFAMiSSF57667 SSF57667, 3 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 7 hits
PS50157 ZINC_FINGER_C2H2_2, 5 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB5U8M3_CAEEL
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B5U8M3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 4, 2008
Last sequence update: November 4, 2008
Last modified: September 18, 2019
This is version 84 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
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