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Protein
Submitted name:

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

Gene

HMG20B

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-relatedImported
Gene namesi
Name:HMG20BImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 19

Organism-specific databases

EuPathDBiHostDB:ENSG00000064961.18
HGNCiHGNC:5002 HMG20B

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000064961

PTM / Processingi

Proteomic databases

EPDiB5MDG7
MaxQBiB5MDG7
PeptideAtlasiB5MDG7
PRIDEiB5MDG7

Expressioni

Gene expression databases

BgeeiENSG00000064961 Expressed in 210 organ(s), highest expression level in lower esophagus muscularis layer
ExpressionAtlasiB5MDG7 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliB5MDG7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili137 – 157Sequence analysisAdd BLAST21
Coiled coili213 – 268Sequence analysisAdd BLAST56

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00730000110938
HOGENOMiHOG000247029
HOVERGENiHBG059870

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 6 potential isoforms that are computationally mapped.Show allAlign All

B5MDG7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSHGPKQPGA AAAPAGGKAP GQHGGFVVTV KQERGEGPRA GEKGSHEEEP
60 70 80 90 100
GSAAGEETRL AQGQEAEEDS AEWAQGTGHG LRALPERAAR ADPHAPPGSA
110 120 130 140 150
LSRDHQDAGR RVEQAAANGK AGFPCFKPSG AAPQRYLDEA EREKQQYMKE
160 170 180 190 200
LRAYQQSEAY KMCTEKIQEK KIKKEDSSSG LMNTLLNGHK GGDCDGFSTF
210 220 230 240 250
DVPIFTEEFL DQNKAREAEL RRLRKMNVAF EEQNAVLQRH TQSMSSARER
260 270 280
LEQELALEER RTLALQQQLQ AVRQALTASF ASLPVP
Length:286
Mass (Da):31,199
Last modified:November 3, 2009 - v2
Checksum:i1ABC5980F4630C92
GO

Computationally mapped potential isoform sequencesi

There are 6 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q9P0W2HM20B_HUMAN
SWI/SNF-related matrix-associated a...
HMG20B BRAF35, HMGX2, HMGXB2, SMARCE1R
317Annotation score:
C9J8X5C9J8X5_HUMAN
SWI/SNF-related matrix-associated a...
HMG20B
215Annotation score:
C9K049C9K049_HUMAN
SWI/SNF-related matrix-associated a...
HMG20B
165Annotation score:
C9JQA7C9JQA7_HUMAN
SWI/SNF-related matrix-associated a...
HMG20B
142Annotation score:
K7EJR8K7EJR8_HUMAN
SWI/SNF-related matrix-associated a...
HMG20B
184Annotation score:
F8WES5F8WES5_HUMAN
SWI/SNF-related matrix-associated a...
HMG20B
125Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei286Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005786 Genomic DNA No translation available.
AC116968 Genomic DNA No translation available.

Genome annotation databases

EnsembliENST00000262949; ENSP00000262949; ENSG00000064961
UCSCiuc060rqv.1 human

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005786 Genomic DNA No translation available.
AC116968 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliB5MDG7
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

EPDiB5MDG7
MaxQBiB5MDG7
PeptideAtlasiB5MDG7
PRIDEiB5MDG7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000262949; ENSP00000262949; ENSG00000064961
UCSCiuc060rqv.1 human

Organism-specific databases

EuPathDBiHostDB:ENSG00000064961.18
HGNCiHGNC:5002 HMG20B
OpenTargetsiENSG00000064961
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00730000110938
HOGENOMiHOG000247029
HOVERGENiHBG059870

Miscellaneous databases

ChiTaRSiHMG20B human

Gene expression databases

BgeeiENSG00000064961 Expressed in 210 organ(s), highest expression level in lower esophagus muscularis layer
ExpressionAtlasiB5MDG7 baseline and differential

Family and domain databases

ProtoNetiSearch...

Entry informationi

Entry nameiB5MDG7_HUMAN
AccessioniPrimary (citable) accession number: B5MDG7
Entry historyiIntegrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: November 3, 2009
Last modified: September 12, 2018
This is version 67 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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