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Protein
Submitted name:

Rab40b, member RAS oncogene family

Gene

Rab40b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Pathwayi: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.SAAS annotation
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-RNO-8873719 RAB geranylgeranylation
UniPathwayi
UPA00143

Names & Taxonomyi

Protein namesi
Submitted name:
Rab40b, member RAS oncogene familyImported
Submitted name:
Rab40b, member RAS oncogene family (Predicted)Imported
Gene namesi
Name:Rab40bImported
Synonyms:Rab40b_predictedImported
ORF Names:rCG_32439Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1305663 Rab40b

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000036661 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000051800

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini176 – 229SOCS boxInterPro annotationAdd BLAST54

Phylogenomic databases

eggNOGiKOG0078 Eukaryota
ENOG410XPUI LUCA
GeneTreeiENSGT00900000140786
HOGENOMiHOG000233967
HOVERGENiHBG009351
KOiK07928
OMAiDGINRWI
OrthoDBiEOG091G0DGV
TreeFamiTF323230

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
IPR001496 SOCS_box
IPR036036 SOCS_box-like_dom_sf
PfamiView protein in Pfam
PF00071 Ras, 1 hit
PF07525 SOCS_box, 1 hit
SMARTiView protein in SMART
SM00253 SOCS, 1 hit
SM00969 SOCS_box, 1 hit
SUPFAMiSSF158235 SSF158235, 1 hit
SSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS50225 SOCS, 1 hit

Sequencei

Sequence statusi: Complete.

B5DF78-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMSSLGSPVR AYDFLLKFLL VGDSDVGKGE ILASLQDGAA ESPYGHPAGI
60 70 80 90 100
DHKTTTILLD GRRVKLQLWD TSGQGRFCTI FRSYSRGAQG VILVYDIANR
110 120 130 140 150
WSFDGINRWI KEIDEHAPGV PKILVGNRLH LAFKRQVPTE QAQAYAERLG
160 170 180 190 200
VTFFEVSPLC NFNITESFTE LARIVLLRHG MDRLWRPSKV LSLQDLCCRA
210 220 230 240 250
VVSCTPVHLV DKLPLPVALR SHLKSFSMAN GLNTRMMHGR SYSLTANSSH
260 270
KRNSFRKVRT IRPPQSPPRN CARNSCKIS
Length:279
Mass (Da):31,263
Last modified:October 14, 2008 - v1
Checksum:i377BE3BE5579F429
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC110474 Genomic DNA No translation available.
BC168956 mRNA Translation: AAI68956.1
CH473948 Genomic DNA Translation: EDM06950.1
RefSeqiNP_001100546.1, NM_001107076.1
UniGeneiRn.8397

Genome annotation databases

EnsembliENSRNOT00000054917; ENSRNOP00000051800; ENSRNOG00000036661
GeneIDi303754
KEGGirno:303754

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC110474 Genomic DNA No translation available.
BC168956 mRNA Translation: AAI68956.1
CH473948 Genomic DNA Translation: EDM06950.1
RefSeqiNP_001100546.1, NM_001107076.1
UniGeneiRn.8397

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000051800

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000054917; ENSRNOP00000051800; ENSRNOG00000036661
GeneIDi303754
KEGGirno:303754

Organism-specific databases

CTDi10966
RGDi1305663 Rab40b

Phylogenomic databases

eggNOGiKOG0078 Eukaryota
ENOG410XPUI LUCA
GeneTreeiENSGT00900000140786
HOGENOMiHOG000233967
HOVERGENiHBG009351
KOiK07928
OMAiDGINRWI
OrthoDBiEOG091G0DGV
TreeFamiTF323230

Enzyme and pathway databases

UniPathwayi
UPA00143

ReactomeiR-RNO-8873719 RAB geranylgeranylation

Gene expression databases

BgeeiENSRNOG00000036661 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
IPR001496 SOCS_box
IPR036036 SOCS_box-like_dom_sf
PfamiView protein in Pfam
PF00071 Ras, 1 hit
PF07525 SOCS_box, 1 hit
SMARTiView protein in SMART
SM00253 SOCS, 1 hit
SM00969 SOCS_box, 1 hit
SUPFAMiSSF158235 SSF158235, 1 hit
SSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS50225 SOCS, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiB5DF78_RAT
AccessioniPrimary (citable) accession number: B5DF78
Entry historyiIntegrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: October 10, 2018
This is version 94 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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