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Protein
Submitted name:

RCG63400

Gene

Trim59

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
RCG63400Imported
Submitted name:
Tripartite motif-containing 59Imported
Gene namesi
Name:Trim59Imported
ORF Names:rCG_63400Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 2

Organism-specific databases

RGDi1311956 Trim59

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei329 – 348HelicalSequence analysisAdd BLAST20

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSRNOG00000010515 Expressed in 9 organ(s), highest expression level in spleen

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 60RING-typeInterPro annotationAdd BLAST51
Domaini92 – 134B box-typeInterPro annotationAdd BLAST43

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG410ITG5 Eukaryota
ENOG410YH9X LUCA
GeneTreeiENSGT00760000118878
HOGENOMiHOG000013095
HOVERGENiHBG060002
KOiK12028
OMAiCSWPDKD
OrthoDBiEOG091G06VP
TreeFamiTF331669

Family and domain databases

Gene3Di3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR027370 Znf-RING_LisH
IPR000315 Znf_B-box
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD
IPR017907 Znf_RING_CS
PfamiView protein in Pfam
PF00643 zf-B_box, 1 hit
PF13445 zf-RING_UBOX, 1 hit
SMARTiView protein in SMART
SM00184 RING, 1 hit
PROSITEiView protein in PROSITE
PS50119 ZF_BBOX, 1 hit
PS00518 ZF_RING_1, 1 hit
PS50089 ZF_RING_2, 1 hit

Sequencei

Sequence statusi: Complete.

B5DF13-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MHNFEDELTC PICYSIFDDP RVLPCSHTFC RNCLENVLQA SGNFYIWRPL
60 70 80 90 100
RIPLKCPNCR SIIEIASTGI ESLPVNFALR AIIEKYQQED HPDVVTCPEH
110 120 130 140 150
YRQPLNVYCL LDKKLVCGHC LTIGQHHGHP IDDLQSAYLK EKDTPQKLFK
160 170 180 190 200
QLTDTHWTDI TRLIEKLEEQ KCHSEKIVQS DKEVVLQYFK ELTDTLEQKK
210 220 230 240 250
KFFLAALCDV GKMINQEYTP QIERMKEIRE QQLELMTMTT SLQDESPLKF
260 270 280 290 300
LEKIDDVRQR VQMLKQRPLP EVQPVEIYPR VSNVLKEEWS RTEIGRIKKA
310 320 330 340 350
VIPEMRISSK RMPCSWPDKD EKEMECFKIL NIAIVSLISV ILMLILLFNH
360 370 380 390 400
HIITFLNEIT SICFSEVFLS VYQSLSKNLY DLKNTVCYTL YLLKEFMWKI

VSC
Length:403
Mass (Da):47,357
Last modified:October 14, 2008 - v1
Checksum:iE88BB8CE3CB32FC3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07011673 Genomic DNA No translation available.
BC168884 mRNA Translation: AAI68884.1
CH473976 Genomic DNA Translation: EDM00910.1
RefSeqiNP_001102415.1, NM_001108945.1
XP_006232546.1, XM_006232484.3
XP_006232547.1, XM_006232485.3
UniGeneiRn.205621

Genome annotation databases

EnsembliENSRNOT00000013987; ENSRNOP00000013987; ENSRNOG00000010515
GeneIDi365813
KEGGirno:365813
UCSCiRGD:1311956 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07011673 Genomic DNA No translation available.
BC168884 mRNA Translation: AAI68884.1
CH473976 Genomic DNA Translation: EDM00910.1
RefSeqiNP_001102415.1, NM_001108945.1
XP_006232546.1, XM_006232484.3
XP_006232547.1, XM_006232485.3
UniGeneiRn.205621

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000013987; ENSRNOP00000013987; ENSRNOG00000010515
GeneIDi365813
KEGGirno:365813
UCSCiRGD:1311956 rat

Organism-specific databases

CTDi286827
RGDi1311956 Trim59

Phylogenomic databases

eggNOGiENOG410ITG5 Eukaryota
ENOG410YH9X LUCA
GeneTreeiENSGT00760000118878
HOGENOMiHOG000013095
HOVERGENiHBG060002
KOiK12028
OMAiCSWPDKD
OrthoDBiEOG091G06VP
TreeFamiTF331669

Gene expression databases

BgeeiENSRNOG00000010515 Expressed in 9 organ(s), highest expression level in spleen

Family and domain databases

Gene3Di3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR027370 Znf-RING_LisH
IPR000315 Znf_B-box
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD
IPR017907 Znf_RING_CS
PfamiView protein in Pfam
PF00643 zf-B_box, 1 hit
PF13445 zf-RING_UBOX, 1 hit
SMARTiView protein in SMART
SM00184 RING, 1 hit
PROSITEiView protein in PROSITE
PS50119 ZF_BBOX, 1 hit
PS00518 ZF_RING_1, 1 hit
PS50089 ZF_RING_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiB5DF13_RAT
AccessioniPrimary (citable) accession number: B5DF13
Entry historyiIntegrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: November 7, 2018
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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