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UniProtKB - B5DED6 (B5DED6_XENTR)

Entry version 81 (02 Dec 2020)
Sequence version 1 (14 Oct 2008)
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Protein

Protein-tyrosine-phosphatase

Gene

ptprb

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolase, Protein phosphataseARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein-tyrosine-phosphataseARBA annotation (EC:3.1.3.48ARBA annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ptprbImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri8364 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Amphibia › Batrachia › Anura › Pipoidea › Pipidae › Xenopodinae › Xenopus › Silurana

Organism-specific databases

Xenopus laevis and tropicalis biology and genomics resource

More...Xenbasei		XB-GENE-991728, ptprb

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei1897 – 1923HelicalSequence analysisAdd BLAST27

Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Keywords - PTMi

GlycoproteinARBA annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1 – 43Ricin B-type lectinInterPro annotationAdd BLAST43
Domaini278 – 376Ig-likeInterPro annotationAdd BLAST99
Domaini393 – 486Fibronectin type-IIIInterPro annotationAdd BLAST94
Domaini569 – 660Fibronectin type-IIIInterPro annotationAdd BLAST92
Domaini661 – 749Fibronectin type-IIIInterPro annotationAdd BLAST89
Domaini750 – 842Fibronectin type-IIIInterPro annotationAdd BLAST93
Domaini923 – 1017Fibronectin type-IIIInterPro annotationAdd BLAST95
Domaini1102 – 1186Fibronectin type-IIIInterPro annotationAdd BLAST85
Domaini1187 – 1281Fibronectin type-IIIInterPro annotationAdd BLAST95
Domaini1368 – 1455Fibronectin type-IIIInterPro annotationAdd BLAST88
Domaini1456 – 1543Fibronectin type-IIIInterPro annotationAdd BLAST88
Domaini1544 – 1637Fibronectin type-IIIInterPro annotationAdd BLAST94
Domaini1638 – 1729Fibronectin type-IIIInterPro annotationAdd BLAST92
Domaini1988 – 2248Tyrosine-protein phosphataseInterPro annotationAdd BLAST261
Domaini2163 – 2239TYR_PHOSPHATASE_2InterPro annotationAdd BLAST77

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni98 – 251DisorderedSequence analysisAdd BLAST154

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi108 – 152Pro-richSequence analysisAdd BLAST45
Compositional biasi153 – 251PolarSequence analysisAdd BLAST99

Keywords - Domaini

Immunoglobulin domainARBA annotation, RepeatARBA annotation, SignalARBA annotation, Transmembrane, Transmembrane helixSequence analysisARBA annotation

Phylogenomic databases

Database of Orthologous Groups

More...OrthoDBi		411281at2759

Family and domain databases

Conserved Domains Database

More...CDDi		cd00063, FN3, 10 hits

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.60.40.10, 15 hits
3.90.190.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR003961, FN3_dom
IPR036116, FN3_sf
IPR007110, Ig-like_dom
IPR013783, Ig-like_fold
IPR029021, Prot-tyrosine_phosphatase-like
IPR000242, PTPase_domain
IPR041201, PTPRJ_TM
IPR035992, Ricin_B-like_lectins
IPR000772, Ricin_B_lectin
IPR016130, Tyr_Pase_AS
IPR003595, Tyr_Pase_cat
IPR000387, TYR_PHOSPHATASE_dom

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00041, fn3, 13 hits
PF18861, PTP_tm, 1 hit
PF00102, Y_phosphatase, 1 hit

Protein Motif fingerprint database; a protein domain database

More...PRINTSi		PR00700, PRTYPHPHTASE

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00060, FN3, 16 hits
SM00194, PTPc, 1 hit
SM00404, PTPc_motif, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF49265, SSF49265, 16 hits
SSF50370, SSF50370, 1 hit
SSF52799, SSF52799, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50853, FN3, 11 hits
PS50835, IG_LIKE, 1 hit
PS50231, RICIN_B_LECTIN, 1 hit
PS00383, TYR_PHOSPHATASE_1, 1 hit
PS50056, TYR_PHOSPHATASE_2, 1 hit
PS50055, TYR_PHOSPHATASE_PTP, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B5DED6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTSRGQQWKW TENGKLQHMK SAMCLGISNS SAAHSRPALM LSCFKAPKWT 
        60         70         80         90        100
CYENLLEVAE TSLFLRKQGP RLVVRKGMKY PNTWRRIEVD DQGVATNWSL 
       110        120        130        140        150
CTEPPTNSPS TIKPPTNRPS TTKPPTNRPS TTKPPTNRPS TTKPPTNRPS 
       160        170        180        190        200
TTKPPTNRPS TTKPSTNRPS TAKSPTNRSS TTKSPTNRPS TTKPPTNRSS 
       210        220        230        240        250
TAESPTNRSS TTKSPTNSTS TTMPLTKNPS ITKPPTNHPS PTTNDVSNGT 
       260        270        280        290        300
SRPLILMANS TELNSPNGTS WYVSDLSPTV ATDVFLPTTT QLNENSIAEN 
       310        320        330        340        350
VEPVKCTINN TDVTVTSQSI YLEWTSPGSH CNFSLTCSSH NFWEITCNPI 
       360        370        380        390        400
QKSNDSYECT LSGLEAGTVF DLRIVSLQDG EMKNLSLQTD PLPPSNFVVN 
       410        420        430        440        450
KNSVTSSSVQ ANWAPSSGKV DLYKVKLLDS KKEIVQEIEV SGISLTKEVT 
       460        470        480        490        500
FKNLTPGTKY SIEITAISGN KRSPTSVINA STVPSTVKSI DANSKTDTID 
       510        520        530        540        550
ASWKPGHGNI DSYKLILLNE DRKITEVVLE QNITSYSFHG LLPGYVYNLT 
       560        570        580        590        600
VISEAAGLRT WNSKLIRTAP AEVQAISVQS DGRTDALKVQ WKEPRGKLDF 
       610        620        630        640        650
YNVTLSDTGS IKYSRTVHPG TPTEITFTGL TPGHLYQVGI STIAGELSTS 
       660        670        680        690        700
RMATGQTIPE KVADLKAVSN GLRSLRLSWV PPSGDWDKYN IVLYNNTAVL 
       710        720        730        740        750
VNTTIDKKYR EYVIQDIGLI PGRQYEAVVI VESGKFKNLA RCKGRTAPPA 
       760        770        780        790        800
VMDLRLKHAN ESSLTIMWVM PVAEWDNYVV SLADRDLTPV NKVLSKEAKE 
       810        820        830        840        850
FTFNHLAQGR KYIATVTSIS GDLSSRASVE GRTVPAQVTN LNVENQGTTS 
       860        870        880        890        900
SLHADWTKAP GDVDSYQVLL IHEKIVIKNE TVSNEINKYS FHSLKPGGLY 
       910        920        930        940        950
SVVVTTVSGG ISSRQTVSEG RTVPSSVNRV TINNFGRSDY LSISWQPAAG 
       960        970        980        990       1000
DVDIYFVTLS HQNNILPSLA ISKSVNECSF SSLTAGRLYN VTVTTKSGKY 
      1010       1020       1030       1040       1050
ENHSYSQEWT VPSAVQGLAV NNAARSDYLK ASWLRAVGDF DIYQVTIKNN 
      1060       1070       1080       1090       1100
NDFIQIKDVT KTENECVFTN LVPGRLYSIT VMTKSGNYKA SAMASGRTFP 
      1110       1120       1130       1140       1150
EAVKKLTLAE RSSEELHVTW SRADGDVDHY EIQLLFNDMK VFPPITLNNT 
      1160       1170       1180       1190       1200
ADEYKFTSLT PGRLYKIVVL TFSGEAQRAM FVEALTVPST VKNIHISPNG 
      1210       1220       1230       1240       1250
MTNSLKVNWT PGGGDVDSYT VSIFHHNSPI GSHTTSKHIF EHTFQNLNPG 
      1260       1270       1280       1290       1300
ELYKVDVQTN SGSLHKSLES FGRTIPATVH SLSADNAYSS HLLIVSWQSA 
      1310       1320       1330       1340       1350
KGVTDRYDIL LLSDHGIVIT NKSVPIMAKS HKFEDLVPGK KYRIQVFTVS 
      1360       1370       1380       1390       1400
GGLFSAAVET EGQTVPAAVS DVKITGNSTD SLSFTWNSSE GELDSYGIFL 
      1410       1420       1430       1440       1450
YNPDNSLHDR KSGNPDLRHC SFQGLLPGRL YKMVIVTHSG SLTNESSIHG 
      1460       1470       1480       1490       1500
RTVPAPVSSL QVSNRNTSES LWFTWAPALG DVDIYELILY NPNGTEKEKI 
      1510       1520       1530       1540       1550
QDKDLTESHF QNLVPGRLYT LVIFTHSGDL FNKATAVGRT APQPPNSVSF 
      1560       1570       1580       1590       1600
ADVKINSLSI MWLGPPDWTD YDDFELQWSP KDLLVVVNPY SIGRSKGRII 
      1610       1620       1630       1640       1650
NGLYPGRQYT FGVQSVSGNT GKTLSPAIFG TVRTKPDKIH HLHCRPQTST 
      1660       1670       1680       1690       1700
AISCSWTPPD SDFDGYSVEC RRNGSDDVEF SKRIEKDKSS ITISTLVPHK 
      1710       1720       1730       1740       1750
RYVVSIKVHS ADMTSQVIED SAITMIDRPP PPPLLIRVNK KDTFISKSSI 
      1760       1770       1780       1790       1800
HFRFNCSWFS DTNGAVKYFT VIVSEADGND NQRPEASLPL PSYADYKTNK 
      1810       1820       1830       1840       1850
STKIYQTSYF PSRCAENPDY NIQSYKIKLG TGMELLGGKC DQNENKYCDG 
      1860       1870       1880       1890       1900
PLSPRTSYRI SVRAFTQLFT EEMRTFPEPL YSDTFFSLPI TTEAEPLFGV 
      1910       1920       1930       1940       1950
IEGVSGGMFV IIMIIVLTVL LIYRQKKKRV YEQDPMTTHL SSQIERIPSV 
      1960       1970       1980       1990       2000
HLNVGHIQIG DRISSRPILT AQFEEHFSKL QTDSNYLLSR EYENLKDFGR 
      2010       2020       2030       2040       2050
DQSSDTALLP ENRGKNRYSN ILPYDSTRVK LANVDDDPCS DYINASYMPG 
      2060       2070       2080       2090       2100
INFRREYIAT QGPLPATKDD FWKMVWEQNV HIIVMVTQCT ERGRAKCDHY 
      2110       2120       2130       2140       2150
WPMDQDSYYY GDLIVQMLSE SVLPEWTIRE FKICSEDQID APRLVRHFHY 
      2160       2170       2180       2190       2200
TVWPDHGVPE TTQSLIQFVR TVRDYINRTP GSGPTVVHCS AGVGRTGTFI 
      2210       2220       2230       2240       2250
VLDRMLQQVD TVDSVDIFGA VRDLRIHRMY MVQTECQYVY LYQCVRDVLR 
      2260       2270       2280 
ARKLRNEQDN PLFPIYENVN PEYHRDAVYL RH
Length:2,282
Mass (Da):254,093
Last modified:October 14, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB01B820113265277
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
BC168627 mRNA Translation: AAI68627.1

NCBI Reference Sequences

More...RefSeqi		NP_001131088.2, NM_001137616.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...GeneIDi		100192375

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		xtr:100192375

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC168627 mRNA Translation: AAI68627.1
RefSeqiNP_001131088.2, NM_001137616.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

GeneIDi100192375
KEGGixtr:100192375

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		5787
XenbaseiXB-GENE-991728, ptprb

Phylogenomic databases

OrthoDBi411281at2759

Family and domain databases

CDDicd00063, FN3, 10 hits
Gene3Di2.60.40.10, 15 hits
3.90.190.10, 1 hit
InterProiView protein in InterPro
IPR003961, FN3_dom
IPR036116, FN3_sf
IPR007110, Ig-like_dom
IPR013783, Ig-like_fold
IPR029021, Prot-tyrosine_phosphatase-like
IPR000242, PTPase_domain
IPR041201, PTPRJ_TM
IPR035992, Ricin_B-like_lectins
IPR000772, Ricin_B_lectin
IPR016130, Tyr_Pase_AS
IPR003595, Tyr_Pase_cat
IPR000387, TYR_PHOSPHATASE_dom
PfamiView protein in Pfam
PF00041, fn3, 13 hits
PF18861, PTP_tm, 1 hit
PF00102, Y_phosphatase, 1 hit
PRINTSiPR00700, PRTYPHPHTASE
SMARTiView protein in SMART
SM00060, FN3, 16 hits
SM00194, PTPc, 1 hit
SM00404, PTPc_motif, 1 hit
SUPFAMiSSF49265, SSF49265, 16 hits
SSF50370, SSF50370, 1 hit
SSF52799, SSF52799, 1 hit
PROSITEiView protein in PROSITE
PS50853, FN3, 11 hits
PS50835, IG_LIKE, 1 hit
PS50231, RICIN_B_LECTIN, 1 hit
PS00383, TYR_PHOSPHATASE_1, 1 hit
PS50056, TYR_PHOSPHATASE_2, 1 hit
PS50055, TYR_PHOSPHATASE_PTP, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB5DED6_XENTR
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B5DED6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: December 2, 2020
This is version 81 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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