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Protein

LIM domain-containing protein

Gene

lims1

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
LIM domain-containing proteinUniRule annotation
Gene namesi
Name:lims1Imported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana

Organism-specific databases

XenbaseiXB-GENE-967923 lims1

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini45 – 106LIM zinc-bindingInterPro annotationAdd BLAST62
Domaini108 – 165LIM zinc-bindingInterPro annotationAdd BLAST58
Domaini170 – 227LIM zinc-bindingInterPro annotationAdd BLAST58
Domaini228 – 287LIM zinc-bindingInterPro annotationAdd BLAST60
Domaini288 – 347LIM zinc-bindingInterPro annotationAdd BLAST60

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

HOGENOMiHOG000253950
HOVERGENiHBG000053

Family and domain databases

InterProiView protein in InterPro
IPR017351 PINCH
IPR001781 Znf_LIM
PANTHERiPTHR24210 PTHR24210, 1 hit
PfamiView protein in Pfam
PF00412 LIM, 5 hits
PIRSFiPIRSF038003 PINCH, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 5 hits
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 5 hits

Sequencei

Sequence statusi: Complete.

B4F6Z9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSALQLKELS QSDLYRRRKE RPDSLGLNGI HADKLSNMAN ALANAICERC
60 70 80 90 100
RSGFAPSEKI VNSNGELYHE QCFVCAQCFQ QFPEGLFYEF EGRKYCEHDF
110 120 130 140 150
QMLFAPCCHQ CGEFIIGRVI KAMNNSWHPE CFRCDICQQV LADIGFVKNA
160 170 180 190 200
GRHLCRPCHN REKARGLGKY ICQKCHAIID EQPLIFKNDP YHPDHFNCAN
210 220 230 240 250
CGKELTADAR ELKGELYCLP CHDKMGVPIC GACRRPIEGR VVNAMGKQWH
260 270 280 290 300
VEHFVCAKCE KPFLGHRHYE RKGLAYCETH YNQLFGDVCF HCNRVIEGDV
310 320 330 340 350
VSALNKAWCV NCFACSTCNT KLTLKNKFVE FDMKPVCKKC YEKFPLELKK
360
RLKKLSEPLA RK
Length:362
Mass (Da):41,612
Last modified:September 23, 2008 - v1
Checksum:i6AF7CFB494DA580E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC168074 mRNA Translation: AAI68074.1
RefSeqiNP_001135570.1, NM_001142098.1
UniGeneiStr.8448

Genome annotation databases

GeneIDi100216119
KEGGixtr:100216119

Similar proteinsi

Entry informationi

Entry nameiB4F6Z9_XENTR
AccessioniPrimary (citable) accession number: B4F6Z9
Entry historyiIntegrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: February 28, 2018
This is version 51 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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