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Protein
Submitted name:

cDNA FLJ53358, highly similar to Heterogeneous nuclear ribonucleoprotein R

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRibonucleoproteinImported, RNA-bindingPROSITE-ProRule annotation, Viral nucleoproteinImported

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ53358, highly similar to Heterogeneous nuclear ribonucleoprotein RImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

    Keywords - Cellular componenti

    Virion

    PTM / Processingi

    Proteomic databases

    MaxQBiB4DMB1
    PeptideAtlasiB4DMB1
    PRIDEiB4DMB1

    Structurei

    3D structure databases

    ProteinModelPortaliB4DMB1
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini127 – 206RRMInterPro annotationAdd BLAST80
    Domaini208 – 290RRMInterPro annotationAdd BLAST83
    Domaini303 – 373RRMInterPro annotationAdd BLAST71

    Phylogenomic databases

    HOGENOMiHOG000186082
    HOVERGENiHBG051917

    Family and domain databases

    CDDicd12488 RRM2_hnRNPR, 1 hit
    Gene3Di3.30.70.330, 3 hits
    InterProiView protein in InterPro
    IPR006535 HnRNP_R/Q_splicing_fac
    IPR034411 hnRNPR_RRM2
    IPR012677 Nucleotide-bd_a/b_plait_sf
    IPR035979 RBD_domain_sf
    IPR000504 RRM_dom
    PfamiView protein in Pfam
    PF00076 RRM_1, 3 hits
    SMARTiView protein in SMART
    SM00360 RRM, 3 hits
    SUPFAMiSSF54928 SSF54928, 3 hits
    TIGRFAMsiTIGR01648 hnRNP-R-Q, 1 hit
    PROSITEiView protein in PROSITE
    PS50102 RRM, 3 hits

    Sequencei

    Sequence statusi: Complete.

    B4DMB1-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MANQVNGNAV QLKEEEEPMD TSSVTHTEHY KTLIEAGLPQ KVAERLDEIF
    60 70 80 90 100
    QTGLVAYVDL DERAIDALRE FNEEGALSVL QQFKESDLSH VQNKSAFLCG
    110 120 130 140 150
    VMKTYRQREK QGSRVQESTK GPDEAKIKVF VGKIPRDLYE DELVPLFEKA
    160 170 180 190 200
    GPIWDLRLMM DPLSGQNRGY AFITFCGKEA AQEAVKLCDS YEIRPGKHLG
    210 220 230 240 250
    VCISVANNRL FVGSIPKNKT KENILEEFSK VTEGLVDVIL YHQPDDKKKN
    260 270 280 290 300
    RGFCFLEYED HKSAAQARRR LMSGKVKVWG NVVTVEWADP VEEPDPEVMA
    310 320 330 340 350
    KVKVLFVRNL ATTVTEEILE KSFSEFGKLE RVKKLKDYAF VHFEDRGAAV
    360 370 380 390 400
    KAMDEMNGKE IEGEEIEIVL AKPPDKKRKE RQAARQASRS TAYEDYYYHP
    410 420 430 440 450
    PPRMPPPIRG RGRGGGRGGY GYPPDYYGYE DYYDDYYGYD YHDYRGGYED
    460 470 480 490 500
    PYYGYDDGYA VRGRGGGRGG RGAPPPPRGR GAPPPRGRAG YSQRGAPLGP
    510 520 530 540 550
    PRGSRGGRGG PAQQQRGRGS RGSRGNRGGN VGGKRKADGY NQPDSKRRQT
    560 570 580 590
    NNQQNWGSQP IAQQPLQQGG DYSGNYGYNN DNQEFYQDTY GQQWK
    Length:595
    Mass (Da):67,008
    Last modified:September 23, 2008 - v1
    Checksum:iA59B0DF02D3BAD17
    GO

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    AK297382 mRNA Translation: BAG59823.1
    RefSeqiNP_001284549.1, NM_001297620.1
    UniGeneiHs.373763

    Genome annotation databases

    GeneIDi10236

    Similar proteinsi

    Entry informationi

    Entry nameiB4DMB1_HUMAN
    AccessioniPrimary (citable) accession number: B4DMB1
    Entry historyiIntegrated into UniProtKB/TrEMBL: September 23, 2008
    Last sequence update: September 23, 2008
    Last modified: May 23, 2018
    This is version 47 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

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