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Protein

Homeobox protein

Gene

HoxA9ab

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi199 – 258HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDevelopmental proteinUniRule annotation, DNA-bindingUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Homeobox proteinUniRule annotation
Gene namesi
Name:HoxA9abImported
Synonyms:hoxa9abImported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo
Proteomesi
  • UP000087266 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini197 – 257HomeoboxInterPro annotationAdd BLAST61

Sequence similaritiesi

Belongs to the Abd-B homeobox family.UniRule annotation

Keywords - Domaini

HomeoboxPROSITE-ProRule annotationSAAS annotationImported

Phylogenomic databases

HOVERGENiHBG016849
KOiK21950

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR020479 Homeobox_metazoa
IPR006711 Hox9_activation_N
IPR017112 HXA9/HXB9/HXC9
PfamiView protein in Pfam
PF00046 Homeobox, 1 hit
PF04617 Hox9_act, 1 hit
PIRSFiPIRSF037109 Homeobox_Hox9, 1 hit
PRINTSiPR00024 HOMEOBOX
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS00027 HOMEOBOX_1, 1 hit
PS50071 HOMEOBOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

B3SUD1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSTSGTLTSY YVDSLILPES EELSAPRYTS GPGGLQHARQ LTSLTDHTEL
60 70 80 90 100
GPCTFPTKAP VFSPSWGHVS TQFPGAVSSV YHHPYGHHQG PASGDVEGRY
110 120 130 140 150
MQSWLLEPIS GSLPLTGLPT SHHYGIKPES LGARVDSALP GSHTALLLSD
160 170 180 190 200
FTNGTVATAS PVDKNTLPGQ TANLNGEIEE KPALDPNNPV SNWLHASATR
210 220 230 240 250
KKRCPYSKHQ ILELEKEFLF NTYLTRDRRF EVARQLNLTE RQVKIWFQNR
260
RMKMKKFNKD CGPKNDL
Length:267
Mass (Da):29,581
Last modified:September 2, 2008 - v1
Checksum:i1CD3D2B8E7AC2E4C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF695313 mRNA Translation: ABV82048.1
EU025693 Genomic DNA Translation: ABW77450.1
RefSeqiNP_001133038.1, NM_001139566.1
UniGeneiSsa.42506

Genome annotation databases

GeneIDi100194476
KEGGisasa:100194476

Similar proteinsi

Entry informationi

Entry nameiB3SUD1_SALSA
AccessioniPrimary (citable) accession number: B3SUD1
Entry historyiIntegrated into UniProtKB/TrEMBL: September 2, 2008
Last sequence update: September 2, 2008
Last modified: March 28, 2018
This is version 55 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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