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Entry version 71 (29 Sep 2021)
Sequence version 1 (22 Jul 2008)
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Protein
Submitted name:

Intraflagellar transport 172

Gene

ift172

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Intraflagellar transport 172Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ift172Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri7955 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesDanionidaeDanioninaeDanio

Organism-specific databases

Zebrafish Information Network genome database

More...
ZFINi
ZDB-GENE-040827-1, ift172

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Cell projection, Cilium, FlagellumImported

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili1036 – 1056Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

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OMAi
YQQLGMW

Database of Orthologous Groups

More...
OrthoDBi
30851at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.130.10.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR015943, WD40/YVTN_repeat-like_dom_sf
IPR001680, WD40_repeat
IPR036322, WD40_repeat_dom_sf

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00320, WD40, 6 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50978, SSF50978, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B3DK94-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQLKYMKTLL TPQDGAAKVT CMAWAPNNAK FAVCTIDRVV ILYDEQGEKR
60 70 80 90 100
DRFTTKPADP KYGKKTYVVK SMAFSPDSTK IAVAQTDNII FVYKIGEEWG
110 120 130 140 150
DKKVICNKFI QTSAVTSLVW PSEHAIIFGL AEGKVRQANT KTSKSSTIYG
160 170 180 190 200
TDSYVVSLTS NVSGKGILSG HADGTVVRYF IDDEGSGESQ GKLLTHACPP
210 220 230 240 250
YALAWGTNSI IVAGCDKKIV AYGKEGNVIQ TFDYSRDRAE KEFTVAASSP
260 270 280 290 300
SGQSIVVGSF DRLRVFNWSP RKGTWDESSP KEIPNLYTIT ALSWKKDGSR
310 320 330 340 350
LSVGTLCGGV EMFDCCLRRS IYKNKFEMTY VGLSQVIVRN LSTGTRVVLK
360 370 380 390 400
SQYGYEIDEV KVMGKDQYLV AHTSDTLLLG DLVSNKLSEV AWQGSGGNEK
410 420 430 440 450
FFFENETVCM IFNAGELALV EYGSNDILGS VRTEFINPHL ISVRLNERRQ
460 470 480 490 500
RGVEDNKKLA YLIDIKTIAI VDLVGGYNLG TISHDSKIDW LELNETGRKL
510 520 530 540 550
LFRDKKLRLH LYDIESSVKS TMLSFCPYVQ WVPGSDVVVA QNRGNLCVWY
560 570 580 590 600
TIDSPERVTM FPLKGDIVDL ERSNGKTEVI VNEGVNSISY TLDEGLIEFG
610 620 630 640 650
TAIDDGDYYR ATAFLETLEM SAETEAMWKT LSKLSLEAQQ LHIAERCFAA
660 670 680 690 700
LGDVSKARFL NETNKIADAV AKEYDGDGTD HYQVKARLAM LDKNFKLAEM
710 720 730 740 750
YYMEQNAVDE VMEMYQELHM WDECIAVAEG KGHPELDNLR RSYYSYLMET
760 770 780 790 800
NQNEKAAEVK ENEGDFTGAV NLYLKAGLPA KAAWLAMSKD ELLSSQDIIS
810 820 830 840 850
RITAALIKGE FYERAGDLFE RTRNNQRALE CYRKGNAFKK AVDLARVAFP
860 870 880 890 900
AEVVKLEEVW GDYLVQQKQM DAAINHYIEA GRSTKAIEAA IAARQWKKAL
910 920 930 940 950
HILELQEDRT AAKYYLKIAQ HYASLQEFEV AERLFVKGDH IKDAIDMYTQ
960 970 980 990 1000
AGRWEQAHKL AVKCMTQEDV SVLYVSRAQE LEKEGKYKEA ERLFTTVDEP
1010 1020 1030 1040 1050
DLAITMYKKN KMYDDMIRLV AVHHKDLLQE THIHLAKELE AESRFQEAEY
1060 1070 1080 1090 1100
HYLEGQDWKA AVNMYRVNDM WEEAYRIAKT HGGANAHKQV AYLWAKSLGG
1110 1120 1130 1140 1150
EAAVKLLNKF GLLETAIDFA ADNYTFDFAF ELARLSMKQK IPDIHLKNAM
1160 1170 1180 1190 1200
FLEDQGNFNE AEIEFIKAGK PKEAVLMHVH NKDWSNAQRV AEAHDPESVA
1210 1220 1230 1240 1250
DILVSQAKFC FDQKEFQKAE AFLLRAQRPE LAIKYYKDAG MWTDAMRICK
1260 1270 1280 1290 1300
DYLPSKLSVL QKEYESEGNW GVEGMIEQAQ EWEQTGDYSR AVDCYLKVKD
1310 1320 1330 1340 1350
SSNLDLLLKC WMKAAELAIK FLSHDKAVDV SQIVGPRLIQ LRKYNEAAEL
1360 1370 1380 1390 1400
YLNLDLIKNA IDAFIEGEEW NKAKRVAKEL DPRLEEYVDK RYKEHLKNQG
1410 1420 1430 1440 1450
KVDSLVGVDV VAALDMYAER GQWEKCIDTA SKQNFKVLHK YIALYATHLI
1460 1470 1480 1490 1500
KEGEVEKVLS LYIQHGVPAY SQNFNIYKRM FQELVNLRDR DCAEAFRMWS
1510 1520 1530 1540 1550
DLRDVLLLLC ENLTKSSEAN SPAHEEFEQM LLVAHYYATR SAAKGIDQLS
1560 1570 1580 1590 1600
SVAAKLSISL LRHTELIPAD KAFYEAGLAA KAVGWENMAF IFLNRFLDLA
1610 1620 1630 1640 1650
DGIDEGTLDA LDHTDFQDTD IPFEVPVPSR LHVTVEKREE IREWVLTVSM
1660 1670 1680 1690 1700
DQRVEQVLPK DERGTYEASL VAASTGIRSL PCVITGYPVL RNKIEFKRPG
1710 1720 1730 1740
MAANKDDWNK FLMATKTTHS PECQDVLKFI TQWCGGLPSA GYSFH
Length:1,745
Mass (Da):197,724
Last modified:July 22, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i2FC2F3B387FA98D4
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
BC163767 mRNA Translation: AAI63767.1

NCBI Reference Sequences

More...
RefSeqi
NP_001002312.1, NM_001002312.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
432389

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
dre:432389

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC163767 mRNA Translation: AAI63767.1
RefSeqiNP_001002312.1, NM_001002312.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

GeneIDi432389
KEGGidre:432389

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
26160
ZFINiZDB-GENE-040827-1, ift172

Phylogenomic databases

OMAiYQQLGMW
OrthoDBi30851at2759

Family and domain databases

Gene3Di2.130.10.10, 2 hits
InterProiView protein in InterPro
IPR015943, WD40/YVTN_repeat-like_dom_sf
IPR001680, WD40_repeat
IPR036322, WD40_repeat_dom_sf
SMARTiView protein in SMART
SM00320, WD40, 6 hits
SUPFAMiSSF50978, SSF50978, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB3DK94_DANRE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B3DK94
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: September 29, 2021
This is version 71 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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