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Protein
Submitted name:

Msxe protein

Gene

msx1a

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi111 – 170HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

GO - Biological processi

  • otic placode formation Source: ZFIN
  • regulation of transcription, DNA-templated Source: InterPro

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Msxe proteinImported
Submitted name:
Muscle segment homeobox 1aImported
Gene namesi
Name:msx1aImported
Synonyms:msxeImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 14

Organism-specific databases

ZFINiZDB-GENE-980526-312 msx1a

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Expressioni

Gene expression databases

BgeeiENSDARG00000007641

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000012308

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini109 – 169HomeoboxInterPro annotationAdd BLAST61

Keywords - Domaini

HomeoboxPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG0492 Eukaryota
ENOG410YT2J LUCA
GeneTreeiENSGT00920000148979
HOGENOMiHOG000231922
HOVERGENiHBG005205
OMAiCMAPSIA
OrthoDBiEOG091G0P1V
TreeFamiTF350699

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR020479 Homeobox_metazoa
IPR000047 HTH_motif
PfamiView protein in Pfam
PF00046 Homeobox, 1 hit
PRINTSiPR00024 HOMEOBOX
PR00031 HTHREPRESSR
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS00027 HOMEOBOX_1, 1 hit
PS50071 HOMEOBOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

B3DG59-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPVVTMSSQ AAEEDAGVML AGQTEMQTRV TVQEDAQRPK ILPFSVEALM
60 70 80 90 100
ADRKPSRGSP DADARLAFSV EVLQLPVKAE SPERSTWVPA ARFSPSRLSP
110 120 130 140 150
PACPLRKHKT NRKPRTPFST AQLLALERKF RQKQYLSIAE RAEFSSSLSL
160 170 180 190 200
TETQVKIWFQ NRRAKAKRLQ EAELEKLKMA AKPLLPPAFG ISFPAGAHIP
210 220 230
AYSAGSHPFH RHSANVSPVG LYTHMGYSMY HLA
Length:233
Mass (Da):25,834
Last modified:July 22, 2008 - v1
Checksum:i4A530BE890D0956F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FQ377959 Genomic DNA No translation available.
BC162283 mRNA Translation: AAI62283.1
BC162290 mRNA Translation: AAI62290.1
UniGeneiDr.75086

Genome annotation databases

EnsembliENSDART00000188819; ENSDARP00000147264; ENSDARG00000116118

Similar proteinsi

Entry informationi

Entry nameiB3DG59_DANRE
AccessioniPrimary (citable) accession number: B3DG59
Entry historyiIntegrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: June 20, 2018
This is version 89 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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