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UniProtKB - B3C5Y9 (B3C5Y9_9BACE)

Entry version 29 (13 Nov 2019)
Sequence version 1 (22 Jul 2008)
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Protein

GH115_C domain-containing protein

Gene

BACINT_00323

Organism
Bacteroides intestinalis DSM 17393
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		GCF_000172175-HMP:BACINT_RS01475-MONOMER

Protein family/group databases

Carbohydrate-Active enZymes

More...CAZyi		GH115 Glycoside Hydrolase Family 115

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
GH115_C domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:BACINT_00323Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacteroides intestinalis DSM 17393Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri471870 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000004596 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		471870.BACINT_00323

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini793 – 961GH115_CInterPro annotationAdd BLAST169

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG4105CVY Bacteria
ENOG410XNPT LUCA

Family and domain databases

Conserved Domains Database

More...CDDi		cd14948 BACON, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.20.20.520, 1 hit
3.30.379.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR024361 BACON
IPR031924 GH115
IPR041437 GH115_C
IPR042301 GH115_sf
IPR029018 Hex-like_dom2

Pfam protein domain database

More...Pfami		View protein in Pfam
PF17829 GH115_C, 1 hit
PF15979 Glyco_hydro_115, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF55545 SSF55545, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B3C5Y9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMRFWFVFMS MFLPVICWGQ IIVKETGGMA AFPLVSSHKT VIYYDAGDYG 
        60         70         80         90        100
VVEKTACLLA EDIKRVTNKK VPVSSKKVSS EYAVVVGTVG HNAFIDRLVA 
       110        120        130        140        150
EGQLDVSAIR GGWEQFVVKT IDDPAKGVKK VLVIAGCDRR GTAYGVFTLS 
       160        170        180        190        200
EAIGVSPLYW WADVPTKRKS QLYIENINYV SQAPSVQYRG IFINDEGWGI 
       210        220        230        240        250
TPWAGKTFDK ELGDIGPKTY AKVCELILRM KGNMLAPAMH PSSGAFNKYP 
       260        270        280        290        300
ENKLVADSYG IIMSSSHCEP LLFNNVTEWD KKTMGEWNYI TNKGGINKIL 
       310        320        330        340        350
DQRVSENAPY ENIYTIAMRG IHDAGLVGVP KDKEVSLVEE VIADQRGILK 
       360        370        380        390        400
QHVDSPLDSI PQIFVPYKEV LDIYERGLRL PEDIMLVWPD DNFGYIKRLN 
       410        420        430        440        450
NKEERNRKGG SGVYYHISYL GEPHDYLWLN TTPPALMFEE MRKAYDTGAK 
       460        470        480        490        500
RYWLLNVGDI KPGELGMKTF LDMAWDIDKF NFDNINNHQV DFLVSVFGEK 
       510        520        530        540        550
YREDIDDIMN SYYHLGFQHK PEAMGWGYEW NNEHAQERMT DTDFSFANYN 
       560        570        580        590        600
EAEGRMQEYD RISDKSEKIW NTLPESYKAA FYELVFYPVK GAALMNKKML 
       610        620        630        640        650
TAQQNRWYAR QGRAATNYLA DRTKAYHDSI DYYTGKYNSL LNGKWNHMMA 
       660        670        680        690        700
LAPGWTATYQ KMPPVTTIDV PQKAEMRVFL PGQDSPLGKI TLNVLPCVNP 
       710        720        730        740        750
YTRKESFIEL YNMGEQAFTW NAKVSDSWIK LSRQSGTTLL QERIIVSVDW 
       760        770        780        790        800
SKVPVGERVT GEIDIISGSN QEKIYLPVFN PAYPTVGELK GWYVEDNGCV 
       810        820        830        840        850
SINPGKFHRK VENEDIKMKV IEGLGYENQC IQLGEATKPV QNPRRSRQAA 
       860        870        880        890        900
KVEYDFYTFN AGSVMVYTYA LPVFPVNSER GTCFGIMIDD GLLKYASNNA 
       910        920        930        940        950
KEYSGEWREN VYRNSTINAV TLNIDKPGKH TLKLICSDPG MIIQKVVIDM 
       960 
GGMKRSYLGP ETTIVR
Length:966
Mass (Da):109,839
Last modified:July 22, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4E94B64A16F4F937
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
ABJL02000002 Genomic DNA Translation: EDV07546.1

NCBI Reference Sequences

More...RefSeqi		WP_007660046.1, NZ_ABJL02000002.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		EDV07546; EDV07546; BACINT_00323

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ABJL02000002 Genomic DNA Translation: EDV07546.1
RefSeqiWP_007660046.1, NZ_ABJL02000002.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi471870.BACINT_00323

Protein family/group databases

CAZyiGH115 Glycoside Hydrolase Family 115

Genome annotation databases

EnsemblBacteriaiEDV07546; EDV07546; BACINT_00323

Phylogenomic databases

eggNOGiENOG4105CVY Bacteria
ENOG410XNPT LUCA

Enzyme and pathway databases

BioCyciGCF_000172175-HMP:BACINT_RS01475-MONOMER

Family and domain databases

CDDicd14948 BACON, 1 hit
Gene3Di3.20.20.520, 1 hit
3.30.379.10, 1 hit
InterProiView protein in InterPro
IPR024361 BACON
IPR031924 GH115
IPR041437 GH115_C
IPR042301 GH115_sf
IPR029018 Hex-like_dom2
PfamiView protein in Pfam
PF17829 GH115_C, 1 hit
PF15979 Glyco_hydro_115, 1 hit
SUPFAMiSSF55545 SSF55545, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB3C5Y9_9BACE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B3C5Y9
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 22, 2008
Last sequence update: July 22, 2008
Last modified: November 13, 2019
This is version 29 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteomeImported
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