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Protein
Submitted name:

RGD1565149 protein

Gene

Vps9d1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
RGD1565149 proteinImported
Submitted name:
VPS9 domain-containing 1Imported
Gene namesi
Name:Vps9d1Imported
Synonyms:RGD1565149Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 19

Organism-specific databases

RGDi1565149 Vps9d1

Expressioni

Gene expression databases

BgeeiENSRNOG00000028904 Expressed in 10 organ(s), highest expression level in skeletal muscle tissue

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini485 – 646VPS9InterPro annotationAdd BLAST162

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili198 – 218Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IT2G Eukaryota
ENOG410YGIS LUCA
GeneTreeiENSGT00390000015057
HOGENOMiHOG000293285
HOVERGENiHBG062847
OMAiDHPISQL
OrthoDBiEOG091G0G38
TreeFamiTF332037

Family and domain databases

Gene3Di1.20.1050.80, 1 hit
InterProiView protein in InterPro
IPR036181 MIT_dom_sf
IPR003123 VPS9
IPR037191 VPS9_dom_sf
PfamiView protein in Pfam
PF02204 VPS9, 1 hit
SMARTiView protein in SMART
SM00167 VPS9, 1 hit
SUPFAMiSSF109993 SSF109993, 1 hit
SSF116846 SSF116846, 1 hit
PROSITEiView protein in PROSITE
PS51205 VPS9, 1 hit

Sequencei

Sequence statusi: Complete.

B2RYG3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAAAAGDGAA KPLQSAMKLA NKAIELDTGN RPREAYMEYL RSIRYISQVL
60 70 80 90 100
LEDVENTTAG ETVPPETSKM LKLAEQCLER AQSTATKLGK ICLKPAIPAA
110 120 130 140 150
PPVPLPSRHR RVCSDEGGKL SPFLPPEIFQ KLQVAESHNS KKELTPLEKA
160 170 180 190 200
SLQNQKLRAT YEARMARLDP SQAMQKTSLT LSLQRQMMEN LVIAKAREET
210 220 230 240 250
LQRKMEQRRL RLQEAANRRF CSQVALTPEE REQRALYAAI LEYEQDHDWP
260 270 280 290 300
KHWRAKLKRS PGDLSLVTSL VSHLLSLPDH PISQLLKKLQ CAVYSALYPV
310 320 330 340 350
VSRAAICAVP APGSCSLPPE ANGLLAPGSR RLRSSQSLYC MLSPSEPSAA
360 370 380 390 400
PRALDGPPST PSIPILHSGT LDREADGSPA GPSSPLVGAL PHLPDKDSSF
410 420 430 440 450
EDLEQFLAMS EPQTPGAKRE PLLECLKSTV KDIHNAIDRL LSLTLLAFES
460 470 480 490 500
LNTATCKDRC LACIEEPFFS PLWPLLLALY RSVHRTREAA VSRSMELYRN
510 520 530 540 550
ALPTALGIPT KLLPCVPEAQ ASTYPYCTAA QELGLLVLES CPQKKLECIV
560 570 580 590 600
RTLRVICICA EDYCRAQEAR PEGGSQPPAA AIGADDLLPI LSFVVLRSGL
610 620 630 640
PQLVSECAAL EEFTHEGYLI GEEGYCLTSL QSALSYVELL SRGRLDK
Length:647
Mass (Da):70,990
Last modified:July 1, 2008 - v1
Checksum:i95C155D4595D32E9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC115273 Genomic DNA No translation available.
BC166767 mRNA Translation: AAI66767.1
RefSeqiNP_001100910.2, NM_001107440.2
UniGeneiRn.204969

Genome annotation databases

EnsembliENSRNOT00000051945; ENSRNOP00000039540; ENSRNOG00000028904
GeneIDi307923
KEGGirno:307923
UCSCiRGD:1565149 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC115273 Genomic DNA No translation available.
BC166767 mRNA Translation: AAI66767.1
RefSeqiNP_001100910.2, NM_001107440.2
UniGeneiRn.204969

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000051945; ENSRNOP00000039540; ENSRNOG00000028904
GeneIDi307923
KEGGirno:307923
UCSCiRGD:1565149 rat

Organism-specific databases

CTDi9605
RGDi1565149 Vps9d1

Phylogenomic databases

eggNOGiENOG410IT2G Eukaryota
ENOG410YGIS LUCA
GeneTreeiENSGT00390000015057
HOGENOMiHOG000293285
HOVERGENiHBG062847
OMAiDHPISQL
OrthoDBiEOG091G0G38
TreeFamiTF332037

Gene expression databases

BgeeiENSRNOG00000028904 Expressed in 10 organ(s), highest expression level in skeletal muscle tissue

Family and domain databases

Gene3Di1.20.1050.80, 1 hit
InterProiView protein in InterPro
IPR036181 MIT_dom_sf
IPR003123 VPS9
IPR037191 VPS9_dom_sf
PfamiView protein in Pfam
PF02204 VPS9, 1 hit
SMARTiView protein in SMART
SM00167 VPS9, 1 hit
SUPFAMiSSF109993 SSF109993, 1 hit
SSF116846 SSF116846, 1 hit
PROSITEiView protein in PROSITE
PS51205 VPS9, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiB2RYG3_RAT
AccessioniPrimary (citable) accession number: B2RYG3
Secondary accession number(s): F1MAA8
Entry historyiIntegrated into UniProtKB/TrEMBL: July 1, 2008
Last sequence update: July 1, 2008
Last modified: September 12, 2018
This is version 63 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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