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Entry version 112 (12 Aug 2020)
Sequence version 2 (24 Nov 2009)
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Protein

Zinc finger and BTB domain-containing protein 42

Gene

ZBTB42

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Transcriptional repressor. Specifically binds DNA and probably acts by recruiting chromatin remodeling multiprotein complexes.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri294 – 316C2H2-type 1PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri334 – 356C2H2-type 2PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri362 – 384C2H2-type 3PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri390 – 413C2H2-type 4PROSITE-ProRule annotationAdd BLAST24

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-binding, Repressor
Biological processTranscription, Transcription regulation
LigandMetal-binding, Zinc

Enzyme and pathway databases

Pathway Commons web resource for biological pathway data

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PathwayCommonsi
B2RXF5

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Zinc finger and BTB domain-containing protein 42
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ZBTB42
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 14

Organism-specific databases

Eukaryotic Pathogen Database Resources

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EuPathDBi
HostDB:ENSG00000179627.9

Human Gene Nomenclature Database

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HGNCi
HGNC:32550, ZBTB42

Online Mendelian Inheritance in Man (OMIM)

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MIMi
613915, gene

neXtProt; the human protein knowledge platform

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neXtProti
NX_B2RXF5

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section provides information on the disease(s) associated with genetic variations in a given protein. The information is extracted from the scientific literature and diseases that are also described in the <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim">OMIM</a> database are represented with a <a href="http://www.uniprot.org/diseases">controlled vocabulary</a> in the following way:<p><a href='/help/involvement_in_disease' target='_top'>More...</a></p>Involvement in diseasei

Lethal congenital contracture syndrome 6 (LCCS6)1 Publication
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionA form of lethal congenital contracture syndrome, an autosomal recessive disorder characterized by degeneration of anterior horn neurons, extreme skeletal muscle atrophy and congenital non-progressive joint contractures. The contractures can involve the upper or lower limbs and/or the vertebral column, leading to various degrees of flexion or extension limitations evident at birth. LCCS6 features include severe polyhydramnios and absent stomach, in addition to multiple contracture deformities.
Related information in OMIM
Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural variantiVAR_073265397R → H in LCCS6; loss of function mutation. 1 PublicationCorresponds to variant dbSNP:rs730882163EnsemblClinVar.1

Keywords - Diseasei

Disease mutation

Organism-specific databases

DisGeNET

More...
DisGeNETi
100128927

MalaCards human disease database

More...
MalaCardsi
ZBTB42
MIMi616248, phenotype

Open Targets

More...
OpenTargetsi
ENSG00000179627

The Pharmacogenetics and Pharmacogenomics Knowledge Base

More...
PharmGKBi
PA144596242

Miscellaneous databases

Pharos NIH Druggable Genome Knowledgebase

More...
Pharosi
B2RXF5, Tbio

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...
BioMutai
ZBTB42

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003437111 – 422Zinc finger and BTB domain-containing protein 42Add BLAST422

Proteomic databases

jPOST - Japan Proteome Standard Repository/Database

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jPOSTi
B2RXF5

MassIVE - Mass Spectrometry Interactive Virtual Environment

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MassIVEi
B2RXF5

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
B2RXF5

PeptideAtlas

More...
PeptideAtlasi
B2RXF5

PRoteomics IDEntifications database

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PRIDEi
B2RXF5

ProteomicsDB: a multi-organism proteome resource

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ProteomicsDBi
3461

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
B2RXF5

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
B2RXF5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in skeletal muscle (at protein level).1 Publication

Gene expression databases

Bgee dataBase for Gene Expression Evolution

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Bgeei
ENSG00000179627, Expressed in amniotic fluid and 132 other tissues

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
B2RXF5, HS

Organism-specific databases

Human Protein Atlas

More...
HPAi
ENSG00000179627, Tissue enhanced (pancreas)

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Hide details
B2RXF5
With#Exp.IntAct
ANKS1A [Q49AR9]3EBI-12287587,EBI-11954519
ASB6 [Q9NWX5]3EBI-12287587,EBI-6425205
ATG9A - isoform 3 [Q7Z3C6-3]3EBI-12287587,EBI-12006308
BLK [P51451]3EBI-12287587,EBI-2105445
C1orf109 [Q9NX04]3EBI-12287587,EBI-8643161
CABP5 [Q9NP86]3EBI-12287587,EBI-10311131
CATSPER1 [Q8NEC5]3EBI-12287587,EBI-744545
CCDC102B [Q68D86]3EBI-12287587,EBI-10171570
CDR2L [Q86X02]3EBI-12287587,EBI-11063830
CIDEC [Q96AQ7]3EBI-12287587,EBI-14151404
CINP [Q9BW66]3EBI-12287587,EBI-739784
CLIC3 [O95833]3EBI-12287587,EBI-10192241
CRY2 [Q49AN0]3EBI-12287587,EBI-2212355
CTBP2 - isoform 3 [P56545-3]3EBI-12287587,EBI-10171902
FMR1 [Q8IXW7]6EBI-12287587,EBI-11976595
GEM [P55040]3EBI-12287587,EBI-744104
GOLGA2 [Q08379]3EBI-12287587,EBI-618309
GUCD1 - isoform 2 [Q96NT3-2]3EBI-12287587,EBI-11978177
HSD3B7 [Q9H2F3]3EBI-12287587,EBI-3918847
HSF2BP [O75031]3EBI-12287587,EBI-7116203
KANK2 [Q63ZY3]3EBI-12287587,EBI-2556193
KCTD9 [Q7L273]3EBI-12287587,EBI-4397613
KRT40 [Q6A162]3EBI-12287587,EBI-10171697
MAGOHB [Q96A72]3EBI-12287587,EBI-746778
MAPK1 [P28482]3EBI-12287587,EBI-959949
MDFI [Q99750]3EBI-12287587,EBI-724076
MID2 - isoform 2 [Q9UJV3-2]3EBI-12287587,EBI-10172526
MKRN3 [Q13064]3EBI-12287587,EBI-2340269
MYLIP [Q8WY64]3EBI-12287587,EBI-6952711
NCK2 [O43639]3EBI-12287587,EBI-713635
NDOR1 [Q9UHB4]5EBI-12287587,EBI-10249760
NOC4L [Q9BVI4]3EBI-12287587,EBI-395927
OAZ3 - isoform 2 [Q9UMX2-2]3EBI-12287587,EBI-12049527
OSGIN1 [Q9UJX0]3EBI-12287587,EBI-9057006
OTX1 [P32242]3EBI-12287587,EBI-740446
PIN1 [Q13526]3EBI-12287587,EBI-714158
PLA2G6 [O60733]3EBI-12287587,EBI-12089905
POLR1C [O15160]3EBI-12287587,EBI-1055079
RAD51D [O75771]3EBI-12287587,EBI-1055693
SNX18 [Q96RF0]3EBI-12287587,EBI-298169
SPG21 [Q9NZD8]3EBI-12287587,EBI-742688
TRAPPC2L - isoform 2 [Q9UL33-2]3EBI-12287587,EBI-11119202
TRIM68 [Q6AZZ1]3EBI-12287587,EBI-2130449
TTC23 - isoform 3 [Q5W5X9-3]3EBI-12287587,EBI-9090990
UBASH3A - isoform 2 [P57075-2]3EBI-12287587,EBI-7353612
USHBP1 [Q8N6Y0]3EBI-12287587,EBI-739895
ZBTB16 [Q05516]3EBI-12287587,EBI-711925
ZBTB7B - isoform 2 [O15156-2]3EBI-12287587,EBI-11522250
ZNF330 [Q9Y3S2]3EBI-12287587,EBI-373456

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

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BioGRIDi
612563, 13 interactors

Protein interaction database and analysis system

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IntActi
B2RXF5, 58 interactors

STRING: functional protein association networks

More...
STRINGi
9606.ENSP00000409107

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...
RNActi
B2RXF5, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
B2RXF5

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini24 – 92BTBPROSITE-ProRule annotationAdd BLAST69

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi127 – 252Pro-richAdd BLAST126

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri294 – 316C2H2-type 1PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri334 – 356C2H2-type 2PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri362 – 384C2H2-type 3PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri390 – 413C2H2-type 4PROSITE-ProRule annotationAdd BLAST24

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
KOG1721, Eukaryota

Ensembl GeneTree

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GeneTreei
ENSGT00940000163959

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
CLU_034521_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
B2RXF5

KEGG Orthology (KO)

More...
KOi
K23196

Identification of Orthologs from Complete Genome Data

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OMAi
PCILQTP

Database of Orthologous Groups

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OrthoDBi
1318335at2759

Database for complete collections of gene phylogenies

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PhylomeDBi
B2RXF5

TreeFam database of animal gene trees

More...
TreeFami
TF337437

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR000210, BTB/POZ_dom
IPR011333, SKP1/BTB/POZ_sf
IPR036236, Znf_C2H2_sf
IPR013087, Znf_C2H2_type

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00651, BTB, 1 hit
PF00096, zf-C2H2, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00225, BTB, 1 hit
SM00355, ZnF_C2H2, 4 hits

Superfamily database of structural and functional annotation

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SUPFAMi
SSF54695, SSF54695, 1 hit
SSF57667, SSF57667, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50097, BTB, 1 hit
PS00028, ZINC_FINGER_C2H2_1, 4 hits
PS50157, ZINC_FINGER_C2H2_2, 4 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B2RXF5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEFPEHGGRL LGRLRQQREL GFLCDCTVLV GDARFPAHRA VLAACSVYFH
60 70 80 90 100
LFYRDRPAGS RDTVRLNGDI VTAPAFGRLL DFMYEGRLDL RSLPVEDVLA
110 120 130 140 150
AASYLHMYDI VKVCKGRLQE KDRSLDPGNP APGAEPAQPP CPWPVWTADL
160 170 180 190 200
CPAARKAKLP PFGVKAALPP RASGPPPCQV PEESDQALDL SLKSGPRQER
210 220 230 240 250
VHPPCVLQTP LCSQRQPGAQ PLVKDERDSL SEQEESSSSR SPHSPPKPPP
260 270 280 290 300
VPAAKGLVVG LQPLPLSGEG SRELELGAGR LASEDELGPG GPLCICPLCS
310 320 330 340 350
KLFPSSHVLQ LHLSAHFRER DSTRARLSPD GVAPTCPLCG KTFSCTYTLK
360 370 380 390 400
RHERTHSGEK PYTCVQCGKS FQYSHNLSRH TVVHTREKPH ACRWCERRFT
410 420
QSGDLYRHVR KFHCGLVKSL LV
Length:422
Mass (Da):46,491
Last modified:November 24, 2009 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iCA057072A5C67DE8
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti232E → K in AAI57834 (PubMed:15489334).Curated1
Sequence conflicti232E → K in AAI71822 (PubMed:15489334).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_073265397R → H in LCCS6; loss of function mutation. 1 PublicationCorresponds to variant dbSNP:rs730882163EnsemblClinVar.1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL590327 Genomic DNA No translation available.
BC157833 mRNA Translation: AAI57834.1
BC171822 mRNA Translation: AAI71822.1

The Consensus CDS (CCDS) project

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CCDSi
CCDS45174.1

NCBI Reference Sequences

More...
RefSeqi
NP_001131073.1, NM_001137601.2
XP_016876400.1, XM_017020911.1

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENST00000342537; ENSP00000409107; ENSG00000179627
ENST00000555360; ENSP00000450673; ENSG00000179627

Database of genes from NCBI RefSeq genomes

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GeneIDi
100128927

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
hsa:100128927

UCSC genome browser

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UCSCi
uc001ypp.4, human

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL590327 Genomic DNA No translation available.
BC157833 mRNA Translation: AAI57834.1
BC171822 mRNA Translation: AAI71822.1
CCDSiCCDS45174.1
RefSeqiNP_001131073.1, NM_001137601.2
XP_016876400.1, XM_017020911.1

3D structure databases

SMRiB2RXF5
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi612563, 13 interactors
IntActiB2RXF5, 58 interactors
STRINGi9606.ENSP00000409107

PTM databases

iPTMnetiB2RXF5
PhosphoSitePlusiB2RXF5

Polymorphism and mutation databases

BioMutaiZBTB42

Proteomic databases

jPOSTiB2RXF5
MassIVEiB2RXF5
PaxDbiB2RXF5
PeptideAtlasiB2RXF5
PRIDEiB2RXF5
ProteomicsDBi3461

Protocols and materials databases

Antibodypedia a portal for validated antibodies

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Antibodypediai
58775, 72 antibodies

Genome annotation databases

EnsembliENST00000342537; ENSP00000409107; ENSG00000179627
ENST00000555360; ENSP00000450673; ENSG00000179627
GeneIDi100128927
KEGGihsa:100128927
UCSCiuc001ypp.4, human

Organism-specific databases

Comparative Toxicogenomics Database

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CTDi
100128927
DisGeNETi100128927
EuPathDBiHostDB:ENSG00000179627.9

GeneCards: human genes, protein and diseases

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GeneCardsi
ZBTB42
HGNCiHGNC:32550, ZBTB42
HPAiENSG00000179627, Tissue enhanced (pancreas)
MalaCardsiZBTB42
MIMi613915, gene
616248, phenotype
neXtProtiNX_B2RXF5
OpenTargetsiENSG00000179627
PharmGKBiPA144596242

GenAtlas: human gene database

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GenAtlasi
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Phylogenomic databases

eggNOGiKOG1721, Eukaryota
GeneTreeiENSGT00940000163959
HOGENOMiCLU_034521_0_0_1
InParanoidiB2RXF5
KOiK23196
OMAiPCILQTP
OrthoDBi1318335at2759
PhylomeDBiB2RXF5
TreeFamiTF337437

Enzyme and pathway databases

PathwayCommonsiB2RXF5

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

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BioGRID-ORCSi
100128927, 5 hits in 884 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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ChiTaRSi
ZBTB42, human

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

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GenomeRNAii
100128927
PharosiB2RXF5, Tbio

Protein Ontology

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PROi
PR:B2RXF5
RNActiB2RXF5, protein

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Gene expression databases

BgeeiENSG00000179627, Expressed in amniotic fluid and 132 other tissues
GenevisibleiB2RXF5, HS

Family and domain databases

InterProiView protein in InterPro
IPR000210, BTB/POZ_dom
IPR011333, SKP1/BTB/POZ_sf
IPR036236, Znf_C2H2_sf
IPR013087, Znf_C2H2_type
PfamiView protein in Pfam
PF00651, BTB, 1 hit
PF00096, zf-C2H2, 2 hits
SMARTiView protein in SMART
SM00225, BTB, 1 hit
SM00355, ZnF_C2H2, 4 hits
SUPFAMiSSF54695, SSF54695, 1 hit
SSF57667, SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS50097, BTB, 1 hit
PS00028, ZINC_FINGER_C2H2_1, 4 hits
PS50157, ZINC_FINGER_C2H2_2, 4 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiZBT42_HUMAN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B2RXF5
Secondary accession number(s): B7ZW21
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 22, 2008
Last sequence update: November 24, 2009
Last modified: August 12, 2020
This is version 112 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Human chromosome 14
    Human chromosome 14: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families
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