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UniProtKB - B2GRF3 (B2GRF3_DANRE)
Protein
Submitted name:
Barx1 protein
Gene
barx1
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Functioni
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
DNA bindingi | 135 – 194 | HomeoboxPROSITE-ProRule annotationAdd BLAST | 60 |
GO - Molecular functioni
- DNA binding Source: UniProtKB-UniRule
- DNA-binding transcription factor activity, RNA polymerase II-specific Source: InterPro
GO - Biological processi
- system development Source: UniProt
Keywordsi
Molecular function | DNA-bindingPROSITE-ProRule annotationARBA annotation |
Names & Taxonomyi
Protein namesi | Submitted name: Barx1 proteinImportedSubmitted name: Homeobox protein BarH-like 1Imported |
Gene namesi | Name:barx1Imported |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Proteomesi |
|
Organism-specific databases
ZFINi | ZDB-GENE-050522-28, barx1 |
Subcellular locationi
Nucleus
- Nucleus PROSITE-ProRule annotation
Nucleus
- nucleus Source: UniProtKB-SubCell
Keywords - Cellular componenti
NucleusPROSITE-ProRule annotationARBA annotationExpressioni
Gene expression databases
Bgeei | ENSDARG00000007407, Expressed in multi-cellular organism and 44 other tissues |
Structurei
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 133 – 193 | HomeoboxInterPro annotationAdd BLAST | 61 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 197 – 248 | DisorderedSequence analysisAdd BLAST | 52 |
Keywords - Domaini
HomeoboxPROSITE-ProRule annotationARBA annotationPhylogenomic databases
GeneTreei | ENSGT00940000160218 |
HOGENOMi | CLU_090214_1_0_1 |
OMAi | LGAHYYP |
OrthoDBi | 1382174at2759 |
Family and domain databases
CDDi | cd00086, homeodomain, 1 hit |
InterProi | View protein in InterPro IPR009057, Homeobox-like_sf IPR017970, Homeobox_CS IPR001356, Homeobox_dom IPR020479, Homeobox_metazoa IPR000047, HTH_motif |
Pfami | View protein in Pfam PF00046, Homeodomain, 1 hit |
PRINTSi | PR00024, HOMEOBOX PR00031, HTHREPRESSR |
SMARTi | View protein in SMART SM00389, HOX, 1 hit |
SUPFAMi | SSF46689, SSF46689, 1 hit |
PROSITEi | View protein in PROSITE PS00027, HOMEOBOX_1, 1 hit PS50071, HOMEOBOX_2, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
B2GRF3-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MQHPLEIGAH YYPPDAHLDQ RSHRYRSFMI EEILTDHPDQ KVSSPTGDLL
60 70 80 90 100
KFGVHALLSA RPYHNHLVLK ADQTGILKFP VSPLSCSLGA PLSSALLSGA
110 120 130 140 150
AGLQVGSSSH HLPLDLHLRG KLDPGADAVS KTKKGRRSRT VFTELQLMGL
160 170 180 190 200
EKRFEKQKYL STPDRIDLAE SLGLSQLQVK TWYQNRRMKW KKIVLQGGGL
210 220 230 240
ESPTKPKGRP KKNSIPTSEQ LSEQERTREA DRLSDGGASS LSDANQEE
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketQ503F2 | BARX1_DANRE | Homeobox protein BarH-like 1 | barx1 barh4 | 248 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CR548622 Genomic DNA No translation available. BC165106 mRNA Translation: AAI65106.1 |
RefSeqi | NP_001020120.1, NM_001024949.1 |
Genome annotation databases
Ensembli | ENSDART00000023889; ENSDARP00000014797; ENSDARG00000007407 |
GeneIDi | 553644 |
KEGGi | dre:553644 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CR548622 Genomic DNA No translation available. BC165106 mRNA Translation: AAI65106.1 |
RefSeqi | NP_001020120.1, NM_001024949.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
Ensembli | ENSDART00000023889; ENSDARP00000014797; ENSDARG00000007407 |
GeneIDi | 553644 |
KEGGi | dre:553644 |
Organism-specific databases
CTDi | 56033 |
ZFINi | ZDB-GENE-050522-28, barx1 |
Phylogenomic databases
GeneTreei | ENSGT00940000160218 |
HOGENOMi | CLU_090214_1_0_1 |
OMAi | LGAHYYP |
OrthoDBi | 1382174at2759 |
Gene expression databases
Bgeei | ENSDARG00000007407, Expressed in multi-cellular organism and 44 other tissues |
Family and domain databases
CDDi | cd00086, homeodomain, 1 hit |
InterProi | View protein in InterPro IPR009057, Homeobox-like_sf IPR017970, Homeobox_CS IPR001356, Homeobox_dom IPR020479, Homeobox_metazoa IPR000047, HTH_motif |
Pfami | View protein in Pfam PF00046, Homeodomain, 1 hit |
PRINTSi | PR00024, HOMEOBOX PR00031, HTHREPRESSR |
SMARTi | View protein in SMART SM00389, HOX, 1 hit |
SUPFAMi | SSF46689, SSF46689, 1 hit |
PROSITEi | View protein in PROSITE PS00027, HOMEOBOX_1, 1 hit PS50071, HOMEOBOX_2, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | B2GRF3_DANRE | |
Accessioni | B2GRF3Primary (citable) accession number: B2GRF3 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | February 19, 2014 |
Last sequence update: | February 19, 2014 | |
Last modified: | January 19, 2022 | |
This is version 56 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |