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Entry version 76 (17 Jun 2020)
Sequence version 1 (20 May 2008)
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Protein
Submitted name:

Sarcosine oxidase, alpha subunit family

Gene

BamMC406_5067

Organism
Burkholderia ambifaria (strain MC40-6)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
BAMB398577:G1GBO-5066-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Sarcosine oxidase, alpha subunit familyImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:BamMC406_5067Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBurkholderia ambifaria (strain MC40-6)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri398577 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001680 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 2

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini170 – 431Pyr_redox_2InterPro annotationAdd BLAST262
Domaini517 – 600SO_alpha_A3InterPro annotationAdd BLAST84
Domaini615 – 879GCV_TInterPro annotationAdd BLAST265
Domaini905 – 994GCV_T_CInterPro annotationAdd BLAST90

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the GcvT family.SAAS annotation

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_011963_0_0_4

Identification of Orthologs from Complete Genome Data

More...
OMAi
FKYSRPR

Database of Orthologous Groups

More...
OrthoDBi
282830at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.10.1100, 1 hit
3.10.20.440, 1 hit
3.30.1360.120, 1 hit
3.50.50.60, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR042204 2Fe-2S-bd_N
IPR041854 BFD-like_2Fe2S-bd_dom_sf
IPR036188 FAD/NAD-bd_sf
IPR023753 FAD/NAD-binding_dom
IPR013977 GCV_T_C
IPR006222 GCV_T_N
IPR029043 GcvT/YgfZ_C
IPR006277 Sarcosine_oxidase_asu
IPR041117 SoxA_A3
IPR027266 TrmE/GcvT_dom1

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01571 GCV_T, 1 hit
PF08669 GCV_T_C, 1 hit
PF07992 Pyr_redox_2, 1 hit
PF17806 SO_alpha_A3, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF037980 SoxA, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF101790 SSF101790, 1 hit
SSF51905 SSF51905, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01372 soxA, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B1Z064-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSQKDRLGTG GRINRAIPLT FTFNGRTYQG FQGDTLASAL LANGVHFVAR
60 70 80 90 100
SFKYHRPRGI VTADVAEPNA VVQLESGPYT VPNARATEIE LYQGLVATSV
110 120 130 140 150
NAEPSLENDK YAINQKFSRF MPAGFYYKTF MWPRNMWPKY EEKIREAAGL
160 170 180 190 200
GKAPEMLDAD RYDKCYAHCD VLVVGGGPSG LAAAHAAATA GARVILVDDQ
210 220 230 240 250
RELGGSLLSC RAEIDGKPAQ QWVEKIEAEL RKLPDVTILS RSTAFGYQDH
260 270 280 290 300
NLVTITQRLT DHQPVSMRKG TRELLWKVRA KRVILATGAH ERPIVFGNND
310 320 330 340 350
LPGVMLAGAV STYVHRYGVM PGRNVVVFTN NDRAYQTALD LKACGAKVTV
360 370 380 390 400
VDSRASSNGA LPAAAKRQGV TVMSGAVVTA ASGKWRVSSV DVASYTNGQT
410 420 430 440 450
GSKLQSLPCD LVAMSGGFSP VLHLFAQSGG KACWNDEKAC FLPGKPVQAE
460 470 480 490 500
ASVGAAAGEF GLARALRLAL DAGVEAAKAA GFAAAQRVAA PQVAETVEGA
510 520 530 540 550
LQPLWLVGSR EDAARGPKQF VDFQNDVAAA DILLAAREGF ESVEHVKRYT
560 570 580 590 600
AMGFGTDQGK LGNINGMAIL AQALGKTIPE TGTTTFRPNY TPVSFGTFAG
610 620 630 640 650
RETGDFLDPI RKTAVHEWHV EHGALFEDVG NWKRPWYFPK NGEDLHAAVK
660 670 680 690 700
RECLAVRNGV GILDASTLGK IDIQGPDAVK LLNWMYTNPW NKLEIGKCRY
710 720 730 740 750
GLMLDENGMV FDDGVTVRLA DQHFMMTTTT GGAARVLTWL ERWLQTEWPD
760 770 780 790 800
MKVRLASVTD HWATFAVVGP KSRKVVQKVC QDIDFGNEAF PFMSYRNGTV
810 820 830 840 850
AGAKARVMRI SFSGELAYEV NVPANAGRAV WEALMAAGAE FDITPYGTET
860 870 880 890 900
MHVLRAEKGY IIVGQDTDGS VTPYDLGMGG LVAKSKDFLG KRSLSRSDTS
910 920 930 940 950
KEGRKQFVGL LTEDEQFVLP EGAQIIAKDT QVSTVDPTPM IGHVTSSYYS
960 970 980 990 1000
PILKRSIALA VVKGGLNKMG ESVVIPLANG RRITAKISSP VFYDTEGVRQ

HVE
Length:1,003
Mass (Da):108,661
Last modified:May 20, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEEB65C38DB3AC7C0
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP001026 Genomic DNA Translation: ACB67513.1

NCBI Reference Sequences

More...
RefSeqi
WP_012366770.1, NC_010552.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ACB67513; ACB67513; BamMC406_5067

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
bac:BamMC406_5067

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001026 Genomic DNA Translation: ACB67513.1
RefSeqiWP_012366770.1, NC_010552.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiACB67513; ACB67513; BamMC406_5067
KEGGibac:BamMC406_5067

Phylogenomic databases

HOGENOMiCLU_011963_0_0_4
OMAiFKYSRPR
OrthoDBi282830at2

Enzyme and pathway databases

BioCyciBAMB398577:G1GBO-5066-MONOMER

Family and domain databases

Gene3Di1.10.10.1100, 1 hit
3.10.20.440, 1 hit
3.30.1360.120, 1 hit
3.50.50.60, 2 hits
InterProiView protein in InterPro
IPR042204 2Fe-2S-bd_N
IPR041854 BFD-like_2Fe2S-bd_dom_sf
IPR036188 FAD/NAD-bd_sf
IPR023753 FAD/NAD-binding_dom
IPR013977 GCV_T_C
IPR006222 GCV_T_N
IPR029043 GcvT/YgfZ_C
IPR006277 Sarcosine_oxidase_asu
IPR041117 SoxA_A3
IPR027266 TrmE/GcvT_dom1
PfamiView protein in Pfam
PF01571 GCV_T, 1 hit
PF08669 GCV_T_C, 1 hit
PF07992 Pyr_redox_2, 1 hit
PF17806 SO_alpha_A3, 1 hit
PIRSFiPIRSF037980 SoxA, 1 hit
SUPFAMiSSF101790 SSF101790, 1 hit
SSF51905 SSF51905, 1 hit
TIGRFAMsiTIGR01372 soxA, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB1Z064_BURA4
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B1Z064
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: June 17, 2020
This is version 76 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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