Tigd5

Functionⁱ

Regions

Feature key	Position(s)	DescriptionActions	Graphical view	Length
DNA bindingⁱ	83 – 103	H-T-H motifBy similarityAdd BLAST		21
DNA bindingⁱ	154 – 187	H-T-H motifBy similarityAdd BLAST		34

GO - Molecular functionⁱ

DNA binding Source: UniProtKB-KW

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	DNA-binding

Molecular function

DNA-binding

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: Tigger transposable element derived 5
Gene namesⁱ	Name:Tigd5
Organismⁱ	Rattus norvegicus (Rat)
Taxonomic identifierⁱ	10116 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus
Proteomesⁱ	UP000002494 Componentⁱ: Chromosome 7

Organism-specific databases

Rat genome database More...RGDⁱ	1311576 Tigd5

RGDⁱ

1311576 Tigd5

Keywords - Cellular componentⁱ

Nucleus

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
ChainⁱPRO_0000416769	1 – 642	Tigger transposable element derived 5Add BLAST		642

Proteomic databases

PaxDbⁱ	B1WC39
PRIDEⁱ	B1WC39

Expressionⁱ

Gene expression databases

Bgeeⁱ	ENSRNOG00000008686 Expressed in 9 organ(s), highest expression level in heart
Genevisibleⁱ	B1WC39 RN

Interactionⁱ

Protein-protein interaction databases

STRINGⁱ	10116.ENSRNOP00000066232

STRINGⁱ

10116.ENSRNOP00000066232

Structureⁱ

3D structure databases

SMRⁱ	B1WC39
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Length
Domainⁱ	56 – 107	HTH psq-typePROSITE-ProRule annotationAdd BLAST	52
Domainⁱ	121 – 194	HTH CENPB-typePROSITE-ProRule annotationAdd BLAST	74
Domainⁱ	239 – 364	DDE-1Sequence analysisAdd BLAST	126

Compositional bias

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Compositional biasⁱ	3 – 53	Pro-richAdd BLAST		51
Compositional biasⁱ	571 – 576	Poly-Glu		6

Sequence similaritiesⁱ

Belongs to the tigger transposable element derived protein family.Curated

Phylogenomic databases

eggNOGⁱ	ENOG410IMJI Eukaryota ENOG4111PP6 LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00760000119149
HOVERGENⁱ	HBG069618
InParanoidⁱ	B1WC39
OMAⁱ	QIYNANV
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G05QK
PhylomeDBⁱ	B1WC39

Family and domain databases

Gene3Dⁱ	1.10.10.10, 1 hit
InterProⁱ	View protein in InterPro IPR004875 DDE_SF_endonuclease_dom IPR009057 Homeobox-like_sf IPR006600 HTH_CenpB_DNA-bd_dom IPR007889 HTH_Psq IPR036388 WH-like_DNA-bd_sf
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF04218 CENP-B_N, 1 hit PF03184 DDE_1, 1 hit PF03221 HTH_Tnp_Tc5, 1 hit
SMARTⁱ	View protein in SMART SM00674 CENPB, 1 hit
SUPFAMⁱ	SSF46689 SSF46689, 2 hits
PROSITEⁱ	View protein in PROSITE PS51253 HTH_CENPB, 1 hit PS50960 HTH_PSQ, 1 hit

Sequenceⁱ

Sequence statusⁱ: Complete.

B1WC39-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MYPASPSAGP ALHPVPHRAR LPRPRCLAEP PRSPAPGPGS TARPPPPAPG 
        60         70         80         90        100
PRPRVAVKMT FRKAYSIKDK LQAIERVKGG ERQASVCRDF GVPGGTLRGW 
       110        120        130        140        150
LKDEPKLRWF LDQLGGEVGT QRKKMRLANE EEIDRAVYSW FLTLRQHGVP 
       160        170        180        190        200
LSGPVIQAQA EAFARQIYGP ECTFKASHGW FWRWQKRHGI SSQRIYGEAE 
       210        220        230        240        250
PPVAGPAPVK EEPAQPSSAG LLLDGTPATL PHSEGGYGDE QIYNANVTGL 
       260        270        280        290        300
YWRLLPEQNA TPGTGDSREP GECSRRWCSD RVTVLLAANL TGSHKLKPLV 
       310        320        330        340        350
IGQLPDPPSL RHHNQDKFPA SYRYSPDAWL SRPLLRGWFF EEFVPGVKRY 
       360        370        380        390        400
LRRSCLQQKA VLLVAHPPCP SWTTSMPAVE ESEGTPRQCQ PELLGSPEEL 
       410        420        430        440        450
QTPDGAVRVL FLSRGNSRAH IPAPLEHGVV AAFKHLYKRE LLRLAVSCAS 
       460        470        480        490        500
GSPLDFMRSF MLKDMLYLAG LSWDLVQAGS IERCWLLGLR AAFEPGQQPA 
       510        520        530        540        550
HQVEEAAEHS RMLSDLTHLA ALAYKRLAPE EVAEWLHLDD DGGLPEGCGE 
       560        570        580        590        600
EVAPAAPPSP ASLPSSIGAG EEEEEEATEQ GGVLVPTAGE AVWGLETALR 
       610        620        630        640 
WLESQDPREV GPLRLVQLRS LITMARRLGG IGPSAAASDD GV

Length:642

Mass (Da):70,268

Last modified:May 20, 2008 - v1

Checksum:ⁱ8ACF932CFBB2C89E

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	CH473950 Genomic DNA Translation: EDM16036.1 BC161993 mRNA Translation: AAI61993.1
NCBI Reference Sequences More...RefSeqⁱ	NP_001119740.1, NM_001126268.2
UniGeneⁱ	Rn.79013

Genome annotation databases

Ensemblⁱ	ENSRNOT00000056527; ENSRNOP00000066232; ENSRNOG00000008686
GeneIDⁱ	300034
KEGGⁱ	rno:300034
UCSC genome browser More...UCSCⁱ	RGD:1311576 rat

Similar proteinsⁱ

90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
B1WC39	tigger transposable element-derived protein 5		MESAU		634	UniRef90_B1WC39
Uncharacterized protein		NEOLE		612
UPI000B4F6C95		MERUN		644
UPI00038C62BC		MICOH		640

Protein	Similar proteins		Species	Score	Length	Source
B1WC39	tigger transposable element-derived protein 5		MESAU		634	UniRef50_B1WC39
Uncharacterized protein		NEOLE		612
Tigger transposable element-derived protein 5 (Fragment)		CALAN		556
Tigger transposable element-derived protein 5		Bengalese finch		529
Tigger transposable element derived 5		TAEGU		514
+40

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	CH473950 Genomic DNA Translation: EDM16036.1 BC161993 mRNA Translation: AAI61993.1
RefSeqⁱ	NP_001119740.1, NM_001126268.2
UniGeneⁱ	Rn.79013

3D structure databases

SMRⁱ	B1WC39
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

STRINGⁱ	10116.ENSRNOP00000066232

STRINGⁱ

10116.ENSRNOP00000066232

Proteomic databases

PaxDbⁱ	B1WC39
PRIDEⁱ	B1WC39

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENSRNOT00000056527; ENSRNOP00000066232; ENSRNOG00000008686
GeneIDⁱ	300034
KEGGⁱ	rno:300034
UCSCⁱ	RGD:1311576 rat

Organism-specific databases

CTDⁱ	84948
RGDⁱ	1311576 Tigd5

Phylogenomic databases

eggNOGⁱ	ENOG410IMJI Eukaryota ENOG4111PP6 LUCA
GeneTreeⁱ	ENSGT00760000119149
HOVERGENⁱ	HBG069618
InParanoidⁱ	B1WC39
OMAⁱ	QIYNANV
OrthoDBⁱ	EOG091G05QK
PhylomeDBⁱ	B1WC39

Miscellaneous databases

Protein Ontology More...PROⁱ	PR:B1WC39

PROⁱ

PR:B1WC39

Gene expression databases

Bgeeⁱ	ENSRNOG00000008686 Expressed in 9 organ(s), highest expression level in heart
Genevisibleⁱ	B1WC39 RN

Family and domain databases

Gene3Dⁱ	1.10.10.10, 1 hit
InterProⁱ	View protein in InterPro IPR004875 DDE_SF_endonuclease_dom IPR009057 Homeobox-like_sf IPR006600 HTH_CenpB_DNA-bd_dom IPR007889 HTH_Psq IPR036388 WH-like_DNA-bd_sf
Pfamⁱ	View protein in Pfam PF04218 CENP-B_N, 1 hit PF03184 DDE_1, 1 hit PF03221 HTH_Tnp_Tc5, 1 hit
SMARTⁱ	View protein in SMART SM00674 CENPB, 1 hit
SUPFAMⁱ	SSF46689 SSF46689, 2 hits
PROSITEⁱ	View protein in PROSITE PS51253 HTH_CENPB, 1 hit PS50960 HTH_PSQ, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	TIGD5_RAT
Accessionⁱ	B1WC39Primary (citable) accession number: B1WC39
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	April 18, 2012
	Last sequence update:	May 20, 2008
	Last modified:	September 12, 2018
	This is version 63 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Chordata Protein Annotation Program

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - B1WC39 (TIGD5_RAT)

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Tigger transposable element derived 5

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<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Nucleus

Nucleus

Keywords - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Proteomic databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Compositional bias

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Miscellaneous databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

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Functionⁱ

GO - Molecular functionⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Keywords - Cellular componentⁱ

PTM / Processingⁱ

Expressionⁱ

Interactionⁱ

Structureⁱ

Family & Domainsⁱ

Sequence similaritiesⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ