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UniProtKB - B1WC39 (TIGD5_RAT)
Protein
Tigger transposable element derived 5
Gene
Tigd5
Organism
Rattus norvegicus (Rat)
Status
Functioni
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
DNA bindingi | 83 – 103 | H-T-H motifBy similarityAdd BLAST | 21 | |
DNA bindingi | 154 – 187 | H-T-H motifBy similarityAdd BLAST | 34 |
GO - Molecular functioni
- DNA binding Source: GO_Central
Keywordsi
Molecular function | DNA-binding |
Names & Taxonomyi
Protein namesi | Recommended name: Tigger transposable element derived 5 |
Gene namesi | Name:Tigd5 |
Organismi | Rattus norvegicus (Rat) |
Taxonomic identifieri | 10116 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus |
Proteomesi |
|
Organism-specific databases
RGDi | 1311576, Tigd5 |
Subcellular locationi
Nucleus
- Nucleus Curated
Nucleus
- nucleus Source: GO_Central
Keywords - Cellular componenti
NucleusPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000416769 | 1 – 642 | Tigger transposable element derived 5Add BLAST | 642 |
Proteomic databases
PaxDbi | B1WC39 |
Expressioni
Gene expression databases
Bgeei | ENSRNOG00000008686, Expressed in testis and 20 other tissues |
Genevisiblei | B1WC39, RN |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 56 – 107 | HTH psq-typePROSITE-ProRule annotationAdd BLAST | 52 | |
Domaini | 121 – 194 | HTH CENPB-typePROSITE-ProRule annotationAdd BLAST | 74 | |
Domaini | 239 – 364 | DDE-1Sequence analysisAdd BLAST | 126 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 54 | DisorderedSequence analysisAdd BLAST | 54 | |
Regioni | 198 – 230 | DisorderedSequence analysisAdd BLAST | 33 | |
Regioni | 543 – 583 | DisorderedSequence analysisAdd BLAST | 41 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 27 – 53 | Pro residuesSequence analysisAdd BLAST | 27 |
Sequence similaritiesi
Belongs to the tigger transposable element derived protein family.Curated
Phylogenomic databases
eggNOGi | KOG3105, Eukaryota |
HOGENOMi | CLU_018294_1_1_1 |
InParanoidi | B1WC39 |
OMAi | DRAVYAW |
OrthoDBi | 1343623at2759 |
PhylomeDBi | B1WC39 |
Family and domain databases
Gene3Di | 1.10.10.10, 1 hit |
InterProi | View protein in InterPro IPR004875, DDE_SF_endonuclease_dom IPR009057, Homeobox-like_sf IPR006600, HTH_CenpB_DNA-bd_dom IPR007889, HTH_Psq IPR036388, WH-like_DNA-bd_sf |
Pfami | View protein in Pfam PF04218, CENP-B_N, 1 hit PF03184, DDE_1, 1 hit PF03221, HTH_Tnp_Tc5, 1 hit |
SMARTi | View protein in SMART SM00674, CENPB, 1 hit |
SUPFAMi | SSF46689, SSF46689, 2 hits |
PROSITEi | View protein in PROSITE PS51253, HTH_CENPB, 1 hit PS50960, HTH_PSQ, 1 hit |
i Sequence
Sequence statusi: Complete.
B1WC39-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MYPASPSAGP ALHPVPHRAR LPRPRCLAEP PRSPAPGPGS TARPPPPAPG
60 70 80 90 100
PRPRVAVKMT FRKAYSIKDK LQAIERVKGG ERQASVCRDF GVPGGTLRGW
110 120 130 140 150
LKDEPKLRWF LDQLGGEVGT QRKKMRLANE EEIDRAVYSW FLTLRQHGVP
160 170 180 190 200
LSGPVIQAQA EAFARQIYGP ECTFKASHGW FWRWQKRHGI SSQRIYGEAE
210 220 230 240 250
PPVAGPAPVK EEPAQPSSAG LLLDGTPATL PHSEGGYGDE QIYNANVTGL
260 270 280 290 300
YWRLLPEQNA TPGTGDSREP GECSRRWCSD RVTVLLAANL TGSHKLKPLV
310 320 330 340 350
IGQLPDPPSL RHHNQDKFPA SYRYSPDAWL SRPLLRGWFF EEFVPGVKRY
360 370 380 390 400
LRRSCLQQKA VLLVAHPPCP SWTTSMPAVE ESEGTPRQCQ PELLGSPEEL
410 420 430 440 450
QTPDGAVRVL FLSRGNSRAH IPAPLEHGVV AAFKHLYKRE LLRLAVSCAS
460 470 480 490 500
GSPLDFMRSF MLKDMLYLAG LSWDLVQAGS IERCWLLGLR AAFEPGQQPA
510 520 530 540 550
HQVEEAAEHS RMLSDLTHLA ALAYKRLAPE EVAEWLHLDD DGGLPEGCGE
560 570 580 590 600
EVAPAAPPSP ASLPSSIGAG EEEEEEATEQ GGVLVPTAGE AVWGLETALR
610 620 630 640
WLESQDPREV GPLRLVQLRS LITMARRLGG IGPSAAASDD GV
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CH473950 Genomic DNA Translation: EDM16036.1 BC161993 mRNA Translation: AAI61993.1 |
RefSeqi | NP_001119740.1, NM_001126268.2 |
Genome annotation databases
Ensembli | ENSRNOT00000056527; ENSRNOP00000066232; ENSRNOG00000008686 |
GeneIDi | 300034 |
KEGGi | rno:300034 |
UCSCi | RGD:1311576, rat |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CH473950 Genomic DNA Translation: EDM16036.1 BC161993 mRNA Translation: AAI61993.1 |
RefSeqi | NP_001119740.1, NM_001126268.2 |
3D structure databases
SMRi | B1WC39 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 10116.ENSRNOP00000066232 |
Proteomic databases
PaxDbi | B1WC39 |
Genome annotation databases
Ensembli | ENSRNOT00000056527; ENSRNOP00000066232; ENSRNOG00000008686 |
GeneIDi | 300034 |
KEGGi | rno:300034 |
UCSCi | RGD:1311576, rat |
Organism-specific databases
CTDi | 84948 |
RGDi | 1311576, Tigd5 |
Phylogenomic databases
eggNOGi | KOG3105, Eukaryota |
HOGENOMi | CLU_018294_1_1_1 |
InParanoidi | B1WC39 |
OMAi | DRAVYAW |
OrthoDBi | 1343623at2759 |
PhylomeDBi | B1WC39 |
Miscellaneous databases
PROi | PR:B1WC39 |
Gene expression databases
Bgeei | ENSRNOG00000008686, Expressed in testis and 20 other tissues |
Genevisiblei | B1WC39, RN |
Family and domain databases
Gene3Di | 1.10.10.10, 1 hit |
InterProi | View protein in InterPro IPR004875, DDE_SF_endonuclease_dom IPR009057, Homeobox-like_sf IPR006600, HTH_CenpB_DNA-bd_dom IPR007889, HTH_Psq IPR036388, WH-like_DNA-bd_sf |
Pfami | View protein in Pfam PF04218, CENP-B_N, 1 hit PF03184, DDE_1, 1 hit PF03221, HTH_Tnp_Tc5, 1 hit |
SMARTi | View protein in SMART SM00674, CENPB, 1 hit |
SUPFAMi | SSF46689, SSF46689, 2 hits |
PROSITEi | View protein in PROSITE PS51253, HTH_CENPB, 1 hit PS50960, HTH_PSQ, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | TIGD5_RAT | |
Accessioni | B1WC39Primary (citable) accession number: B1WC39 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | April 18, 2012 |
Last sequence update: | May 20, 2008 | |
Last modified: | February 23, 2022 | |
This is version 73 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- SIMILARITY comments
Index of protein domains and families