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Protein

Tigger transposable element derived 5

Gene

Tigd5

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi83 – 103H-T-H motifBy similarityAdd BLAST21
DNA bindingi154 – 187H-T-H motifBy similarityAdd BLAST34

GO - Molecular functioni

Keywordsi

Molecular functionDNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Tigger transposable element derived 5
Gene namesi
Name:Tigd5
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi1311576 Tigd5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004167691 – 642Tigger transposable element derived 5Add BLAST642

Proteomic databases

PaxDbiB1WC39
PRIDEiB1WC39

Expressioni

Gene expression databases

BgeeiENSRNOG00000008686
GenevisibleiB1WC39 RN

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000066232

Structurei

3D structure databases

SMRiB1WC39
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini56 – 107HTH psq-typePROSITE-ProRule annotationAdd BLAST52
Domaini121 – 194HTH CENPB-typePROSITE-ProRule annotationAdd BLAST74
Domaini239 – 364DDE-1Sequence analysisAdd BLAST126

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi3 – 53Pro-richAdd BLAST51
Compositional biasi571 – 576Poly-Glu6

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG410IMJI Eukaryota
ENOG4111PP6 LUCA
GeneTreeiENSGT00760000119149
HOVERGENiHBG069618
InParanoidiB1WC39
OMAiQIYNANV
OrthoDBiEOG091G05QK
PhylomeDBiB1WC39

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR004875 DDE_SF_endonuclease_dom
IPR009057 Homeobox-like_sf
IPR006600 HTH_CenpB_DNA-bd_dom
IPR007889 HTH_Psq
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF04218 CENP-B_N, 1 hit
PF03184 DDE_1, 1 hit
PF03221 HTH_Tnp_Tc5, 1 hit
SMARTiView protein in SMART
SM00674 CENPB, 1 hit
SUPFAMiSSF46689 SSF46689, 2 hits
PROSITEiView protein in PROSITE
PS51253 HTH_CENPB, 1 hit
PS50960 HTH_PSQ, 1 hit

Sequencei

Sequence statusi: Complete.

B1WC39-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYPASPSAGP ALHPVPHRAR LPRPRCLAEP PRSPAPGPGS TARPPPPAPG
60 70 80 90 100
PRPRVAVKMT FRKAYSIKDK LQAIERVKGG ERQASVCRDF GVPGGTLRGW
110 120 130 140 150
LKDEPKLRWF LDQLGGEVGT QRKKMRLANE EEIDRAVYSW FLTLRQHGVP
160 170 180 190 200
LSGPVIQAQA EAFARQIYGP ECTFKASHGW FWRWQKRHGI SSQRIYGEAE
210 220 230 240 250
PPVAGPAPVK EEPAQPSSAG LLLDGTPATL PHSEGGYGDE QIYNANVTGL
260 270 280 290 300
YWRLLPEQNA TPGTGDSREP GECSRRWCSD RVTVLLAANL TGSHKLKPLV
310 320 330 340 350
IGQLPDPPSL RHHNQDKFPA SYRYSPDAWL SRPLLRGWFF EEFVPGVKRY
360 370 380 390 400
LRRSCLQQKA VLLVAHPPCP SWTTSMPAVE ESEGTPRQCQ PELLGSPEEL
410 420 430 440 450
QTPDGAVRVL FLSRGNSRAH IPAPLEHGVV AAFKHLYKRE LLRLAVSCAS
460 470 480 490 500
GSPLDFMRSF MLKDMLYLAG LSWDLVQAGS IERCWLLGLR AAFEPGQQPA
510 520 530 540 550
HQVEEAAEHS RMLSDLTHLA ALAYKRLAPE EVAEWLHLDD DGGLPEGCGE
560 570 580 590 600
EVAPAAPPSP ASLPSSIGAG EEEEEEATEQ GGVLVPTAGE AVWGLETALR
610 620 630 640
WLESQDPREV GPLRLVQLRS LITMARRLGG IGPSAAASDD GV
Length:642
Mass (Da):70,268
Last modified:May 20, 2008 - v1
Checksum:i8ACF932CFBB2C89E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH473950 Genomic DNA Translation: EDM16036.1
BC161993 mRNA Translation: AAI61993.1
RefSeqiNP_001119740.1, NM_001126268.2
UniGeneiRn.79013

Genome annotation databases

EnsembliENSRNOT00000056527; ENSRNOP00000066232; ENSRNOG00000008686
GeneIDi300034
KEGGirno:300034
UCSCiRGD:1311576 rat

Similar proteinsi

Entry informationi

Entry nameiTIGD5_RAT
AccessioniPrimary (citable) accession number: B1WC39
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 18, 2012
Last sequence update: May 20, 2008
Last modified: May 23, 2018
This is version 62 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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