Podxl2

Functionⁱ

GO - Biological processⁱ

leukocyte tethering or rolling
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635

View the complete GO annotation on QuickGO ...

Enzyme and pathway databases

Reactomeⁱ	R-RNO-156584 Cytosolic sulfonation of small molecules

Reactomeⁱ

R-RNO-156584 Cytosolic sulfonation of small molecules

Names & Taxonomyⁱ

Protein namesⁱ	Submitted name: Podocalyxin-like 2Imported Submitted name: Podocalyxin-like 2 (Predicted)Imported
Gene namesⁱ	Name:Podxl2Imported Synonyms:Podxl2_predictedImported ORF Names:rCG_56509Imported
Organismⁱ	Rattus norvegicus (Rat)Imported
Taxonomic identifierⁱ	10116 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus
Proteomesⁱ	UP000002494 Componentⁱ: Chromosome 4

Organism-specific databases

Rat genome database More...RGDⁱ	1305815 Podxl2

RGDⁱ

1305815 Podxl2

Subcellular locationⁱ

GO - Cellular component

Topology

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Transmembraneⁱ	497 – 521	HelicalSequence analysisAdd BLAST		25

Keywords - Cellular componentⁱ

Membrane

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Signal peptideⁱ	1 – 28	Sequence analysisAdd BLAST		28
ChainⁱPRO_5014298262	29 – 603	Sequence analysisAdd BLAST		575

Expressionⁱ

Gene expression databases

Bgeeⁱ	ENSRNOG00000016255 Expressed in 10 organ(s), highest expression level in brain

Bgeeⁱ

ENSRNOG00000016255 Expressed in 10 organ(s), highest expression level in brain

Interactionⁱ

Protein-protein interaction databases

STRINGⁱ	10116.ENSRNOP00000021826

STRINGⁱ

10116.ENSRNOP00000021826

Family & Domainsⁱ

Coiled coil

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Coiled coilⁱ	152 – 188	Sequence analysisAdd BLAST		37

Keywords - Domainⁱ

Coiled coilSequence analysis, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGⁱ	ENOG410IFKB Eukaryota ENOG410YCG4 LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00730000111323
HOGENOMⁱ	HOG000054210
HOVERGENⁱ	HBG082114
KEGG Orthology (KO) More...KOⁱ	K06818
OMAⁱ	NGPGGWS
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G04AY
TreeFamⁱ	TF333564

Family and domain databases

InterProⁱ	View protein in InterPro IPR013836 CD34/Podocalyxin
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF06365 CD34_antigen, 1 hit

Sequenceⁱ

Sequence statusⁱ: Complete.

B1WC18-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MARPLRAAGL PPPLLLLLAA GVSLGACAVT MDEPGPEGLT STSLLDLLLP 
        60         70         80         90        100
TDFEPLDSEE PSEAMGLGAG LAPGSGFPSE DSEESRLLQP PQYFWEEEEL 
       110        120        130        140        150
NGSSLDLGPT ADYVFPDLTE KVASMEDPGQ APDLPNLPSI LPKMDLAEPP 
       160        170        180        190        200
WHMPLEEEEE EEEEEEEEER EEEEREKEEA EEEEEEELLP VSGSPGATTQ 
       210        220        230        240        250
AHAPSPSTSS TSSQSPGATR HRQDDSGDQA TSGIEVESSV KPTLSVPSVT 
       260        270        280        290        300
PSTVALGVQN YSQESGGTEW PTGGLGVQSE VPQGAGEEAT VGAADYDGQQ 
       310        320        330        340        350
GALPSTSLPQ TVPPSGTEVP GEGPLYPRTP DSFPPGPQDT ESTPSSATWG 
       360        370        380        390        400
QEGLSEQPLE GQTAEAHSLT PWDSTQVICK DWSNLAGKSY VILNMTENID 
       410        420        430        440        450
CEVFRRHRGL RLLALVEEVL PRHRSGHRGD WHISLSKPSE KEQHLLMTLV 
       460        470        480        490        500
GEQGVVPTQD VLSMLSGIRR SLEEIGIQNY STTSSCQARA TQVRSDYGTL 
       510        520        530        540        550
FVVLVIIGVI CFIIIVLGLL YNCWQRRLPK LKHVSHGEEL RFVENGCHDN 
       560        570        580        590        600
PTLDVASDSQ SEMQEKQPSL NGGAINGPSS WSALMGSKRD PEDSDVFEED 

THL

Length:603

Mass (Da):65,010

Last modified:May 20, 2008 - v1

Checksum:ⁱ76D7C8EFB9B251B5

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AC120997 Genomic DNA No translation available. BC161970 mRNA Translation: AAI61970.1 CH473957 Genomic DNA Translation: EDL91320.1
NCBI Reference Sequences More...RefSeqⁱ	NP_001100077.1, NM_001106607.1
UniGeneⁱ	Rn.100042

Genome annotation databases

Ensemblⁱ	ENSRNOT00000021826; ENSRNOP00000021826; ENSRNOG00000016255
GeneIDⁱ	297433
KEGGⁱ	rno:297433

Protein	Similar proteins		Species	Score	Length	Source
B1WC18	Podocalyxin-like protein 2		MOUSE		603	UniRef90_Q8CAE9
Podocalyxin-like protein 2		CRIGR		573
podocalyxin-like protein 2		MESAU		569
UPI000A30BD34		MUSPA		605
UPI000B4F0B12		MERUN		605
+10

Protein	Similar proteins		Species	Score	Length	Source
B1WC18	Podocalyxin-like protein 2		HUMAN		605	UniRef50_Q9NZ53
Podocalyxin-like protein 2		MOUSE		603
Uncharacterized protein		COLAP		614
Uncharacterized protein		CERAT		609
Uncharacterized protein		RHIBE		609
+122

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AC120997 Genomic DNA No translation available. BC161970 mRNA Translation: AAI61970.1 CH473957 Genomic DNA Translation: EDL91320.1
RefSeqⁱ	NP_001100077.1, NM_001106607.1
UniGeneⁱ	Rn.100042

3D structure databases

ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

STRINGⁱ	10116.ENSRNOP00000021826

STRINGⁱ

10116.ENSRNOP00000021826

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENSRNOT00000021826; ENSRNOP00000021826; ENSRNOG00000016255
GeneIDⁱ	297433
KEGGⁱ	rno:297433

Organism-specific databases

CTDⁱ	50512
RGDⁱ	1305815 Podxl2

Phylogenomic databases

eggNOGⁱ	ENOG410IFKB Eukaryota ENOG410YCG4 LUCA
GeneTreeⁱ	ENSGT00730000111323
HOGENOMⁱ	HOG000054210
HOVERGENⁱ	HBG082114
KOⁱ	K06818
OMAⁱ	NGPGGWS
OrthoDBⁱ	EOG091G04AY
TreeFamⁱ	TF333564

Enzyme and pathway databases

Reactomeⁱ	R-RNO-156584 Cytosolic sulfonation of small molecules

Reactomeⁱ

R-RNO-156584 Cytosolic sulfonation of small molecules

Gene expression databases

Bgeeⁱ	ENSRNOG00000016255 Expressed in 10 organ(s), highest expression level in brain

Bgeeⁱ

ENSRNOG00000016255 Expressed in 10 organ(s), highest expression level in brain

Family and domain databases

InterProⁱ	View protein in InterPro IPR013836 CD34/Podocalyxin
Pfamⁱ	View protein in Pfam PF06365 CD34_antigen, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	B1WC18_RAT
Accessionⁱ	B1WC18Primary (citable) accession number: B1WC18
Entry historyⁱ	Integrated into UniProtKB/TrEMBL:	May 20, 2008
	Last sequence update:	May 20, 2008
	Last modified:	November 7, 2018
	This is version 82 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteomeImported

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - B1WC18 (B1WC18_RAT)

Your basket is currently empty. i <p>When browsing through different UniProt proteins, you can use the ‘basket’ to save them, so that you can back to find or analyse them later.<p><a href='/help/basket' target='_top'>More...</a></p>

Podocalyxin-like 2

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Enzyme and pathway databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Other locations

Topology

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Keywords - Domaini

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

UniProt is an ELIXIR core data resource

Your basket is currently empty. ⁱ

Functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

PTM / Processingⁱ

Expressionⁱ

Interactionⁱ

Family & Domainsⁱ

Keywords - Domainⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ