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Protein
Submitted name:

Epiphycan

Gene

Epyc

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
EpiphycanImported
Submitted name:
Epyc proteinImported
Gene namesi
Name:EpycImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi1305904 Epyc

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_501429826120 – 322Sequence analysisAdd BLAST303

Expressioni

Gene expression databases

BgeeiENSRNOG00000004717 Expressed in 3 organ(s), highest expression level in testis

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini117 – 147LRRNTInterPro annotationAdd BLAST31

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis

Phylogenomic databases

eggNOGiKOG0619 Eukaryota
COG4886 LUCA
GeneTreeiENSGT00730000110781
HOGENOMiHOG000273909
HOVERGENiHBG006850

Family and domain databases

Gene3Di3.80.10.10, 1 hit
InterProiView protein in InterPro
IPR027217 Epiphycan
IPR001611 Leu-rich_rpt
IPR003591 Leu-rich_rpt_typical-subtyp
IPR032675 LRR_dom_sf
IPR000372 LRRNT
PANTHERiPTHR24373:SF123 PTHR24373:SF123, 1 hit
PfamiView protein in Pfam
PF13855 LRR_8, 1 hit
SMARTiView protein in SMART
SM00369 LRR_TYP, 3 hits
SM00013 LRRNT, 1 hit
PROSITEiView protein in PROSITE
PS51450 LRR, 4 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

B1WBV5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRMAARIVLV LIIIDATLAA PTTELFNYDS EVYDAILEDT GTFYNYEHIP
60 70 80 90 100
DNQVETEKVA ERLSGNRELL TPGPQLGDSQ DEDKDEESTP RLIDGSSPQE
110 120 130 140 150
PEFPGLLGPH TNEDFPTCLL CTCISTTVYC DDHELDAIPP LPKKTTYFYS
160 170 180 190 200
RFNRIKKINK NDFASLSDLK RIDLTSNLIS EIDEDAFRNL PRLQELVLRD
210 220 230 240 250
NKIKQLPELP NTLTFIDISN NRLGRKGIKQ EAFKDMYDLH HLYITDNSLD
260 270 280 290 300
HIPLPLPENL QALHLQNNDI LEMHEDTFCN VKNLTYVRKA LEDIRLDGNP
310 320
INLSKTPQAY MCLPRLPIGS FI
Length:322
Mass (Da):36,790
Last modified:May 20, 2008 - v1
Checksum:i9FDF9B74B199D16E
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
G3V6L6G3V6L6_RAT
Dermatan sulphate proteoglycan 3 (P...
Epyc Dspg3_predicted, rCG_48711
359Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07056731 Genomic DNA No translation available.
AABR07056732 Genomic DNA No translation available.
BC161903 mRNA Translation: AAI61903.1
RefSeqiXP_006241348.1, XM_006241286.3
UniGeneiRn.159219

Genome annotation databases

EnsembliENSRNOT00000072166; ENSRNOP00000067851; ENSRNOG00000004717
GeneIDi314772

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07056731 Genomic DNA No translation available.
AABR07056732 Genomic DNA No translation available.
BC161903 mRNA Translation: AAI61903.1
RefSeqiXP_006241348.1, XM_006241286.3
UniGeneiRn.159219

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000072166; ENSRNOP00000067851; ENSRNOG00000004717
GeneIDi314772

Organism-specific databases

CTDi1833
RGDi1305904 Epyc

Phylogenomic databases

eggNOGiKOG0619 Eukaryota
COG4886 LUCA
GeneTreeiENSGT00730000110781
HOGENOMiHOG000273909
HOVERGENiHBG006850

Gene expression databases

BgeeiENSRNOG00000004717 Expressed in 3 organ(s), highest expression level in testis

Family and domain databases

Gene3Di3.80.10.10, 1 hit
InterProiView protein in InterPro
IPR027217 Epiphycan
IPR001611 Leu-rich_rpt
IPR003591 Leu-rich_rpt_typical-subtyp
IPR032675 LRR_dom_sf
IPR000372 LRRNT
PANTHERiPTHR24373:SF123 PTHR24373:SF123, 1 hit
PfamiView protein in Pfam
PF13855 LRR_8, 1 hit
SMARTiView protein in SMART
SM00369 LRR_TYP, 3 hits
SM00013 LRRNT, 1 hit
PROSITEiView protein in PROSITE
PS51450 LRR, 4 hits
ProtoNetiSearch...

Entry informationi

Entry nameiB1WBV5_RAT
AccessioniPrimary (citable) accession number: B1WBV5
Entry historyiIntegrated into UniProtKB/TrEMBL: May 20, 2008
Last sequence update: May 20, 2008
Last modified: October 10, 2018
This is version 85 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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