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Protein

Capsid protein

Gene

ORF5

Organism
Lolium latent virus (isolate Lolium/USA/US1/-) (LoLV)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Required for genome encapsidation. Forms ribonucleoprotein complexes along with TGB1 helicase and viral RNA (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein
Biological processHost-virus interaction

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Short name:
CP
Alternative name(s):
Coat protein
Gene namesi
Name:ORF5
OrganismiLolium latent virus (isolate Lolium/USA/US1/-) (LoLV)
Taxonomic identifieri686945 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesAlphaflexiviridaeLolavirus
Virus hostiLolium multiflorum x Lolium perenne [TaxID: 480553]
Proteomesi
  • UP000008689 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Helical capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004042691 – 293Capsid proteinAdd BLAST293

Interactioni

Subunit structurei

Interacts with host NbANKr; this interaction targets the capsid protein to the host chloroplast.1 Publication

Structurei

3D structure databases

SMRiB1PS80
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the potexvirus capsid protein family.Curated

Phylogenomic databases

OrthoDBiVOG090000QE

Family and domain databases

InterProiView protein in InterPro
IPR000052 Pltvir_coat
PfamiView protein in Pfam
PF00286 Flexi_CP, 1 hit
PRINTSiPR00232 POTXCARLCOAT

Sequencei

Sequence statusi: Complete.

B1PS80-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSESKAETPS KSAEKGVASL STSAPPSSTT PTAQAKQTPP PVATTARPMA
60 70 80 90 100
SRLPRTIAAE GGGTEKKQSH LAEDRIAQYL PKQDAVDHSN LAALLQPFTE
110 120 130 140 150
ASYEREFDVK VNGIASKAEL TAVAETWASR LNVPKENSAV LAQEIAIHCY
160 170 180 190 200
HNGSSEQTDF NLKSSQVAGL NLEAAVGVIK EILTLRQFAA YYATFVWNWG
210 220 230 240 250
IKNEIPPANW VAKGYTDETK YAAFDTFSYV GSPLGLRITP TRKPTNNEYM
260 270 280 290
AASVNAREKI IQSRGKGMVT NSPMFSDGTT HQGIPLHPKL PLS
Length:293
Mass (Da):31,635
Last modified:April 29, 2008 - v1
Checksum:i9FA092FAA311DDFB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU489641 Genomic RNA Translation: ACA53378.1
RefSeqiYP_001718503.1, NC_010434.1

Genome annotation databases

GeneIDi6000101
KEGGivg:6000101

Entry informationi

Entry nameiCAPSD_LOLV
AccessioniPrimary (citable) accession number: B1PS80
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: April 29, 2008
Last modified: July 18, 2018
This is version 30 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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