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Entry version 42 (16 Jan 2019)
Sequence version 1 (29 Apr 2008)
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Protein
Submitted name:

Glycosyl transferase family 39

Gene

Kcr_0199

Organism
Korarchaeum cryptofilum (strain OPF8)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionTransferaseImported

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
CKOR374847:G1GBF-207-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Glycosyl transferase family 39Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Kcr_0199Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiKorarchaeum cryptofilum (strain OPF8)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri374847 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiArchaeaCandidatus KorarchaeotaCandidatus Korarchaeum
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001686 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei6 – 23HelicalSequence analysisAdd BLAST18
Transmembranei174 – 193HelicalSequence analysisAdd BLAST20
Transmembranei199 – 217HelicalSequence analysisAdd BLAST19
Transmembranei224 – 241HelicalSequence analysisAdd BLAST18
Transmembranei253 – 272HelicalSequence analysisAdd BLAST20
Transmembranei284 – 305HelicalSequence analysisAdd BLAST22
Transmembranei352 – 374HelicalSequence analysisAdd BLAST23
Transmembranei381 – 401HelicalSequence analysisAdd BLAST21
Transmembranei407 – 430HelicalSequence analysisAdd BLAST24
Transmembranei527 – 544HelicalSequence analysisAdd BLAST18
Transmembranei550 – 573HelicalSequence analysisAdd BLAST24
Transmembranei585 – 607HelicalSequence analysisAdd BLAST23
Transmembranei641 – 660HelicalSequence analysisAdd BLAST20
Transmembranei666 – 683HelicalSequence analysisAdd BLAST18
Transmembranei742 – 760HelicalSequence analysisAdd BLAST19

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
374847.Kcr_0199

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini152 – 283PMT_2InterPro annotationAdd BLAST132

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
arCOG00561 Archaea
COG4346 LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
B1L3D0

Database of Orthologous Groups

More...
OrthoDBi
115811at2157

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR038731 RgtA/B/C-like

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13231 PMT_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

B1L3D0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRSFTIGLII SIVLASSFFI YAYSEASSPK YRGDDYYVSD EVWYVTSSRN
60 70 80 90 100
LLHEVFGLHP KYSIDGYIFA TLSFNSESDL MEHLDDLDSL LRSIGGEIVR
110 120 130 140 150
ANYTATGDRI AAIWVMVPES NSSKLEVGYA KVRYGFEYPS KSGILEYLNL
160 170 180 190 200
EHPPLGKYII MLSMMILGDS PANWRFPGIL EGSIIIILVY LTVSRLLNPF
210 220 230 240 250
WGVVASIAIA LDPIFYAMSM VAMLDIHLTF FTALCLLFLV YDRPLAASIS
260 270 280 290 300
SWLSFSVKFS GLFSVACTYL YLRIYRGERL LRALAISILP SLVYLALSIP
310 320 330 340 350
LISYLGPERW IQENLNAIAW HTTSRGSGPT PSPPWAWFFN LAPMALHVNP
360 370 380 390 400
DLIARVNFVS YIFSFVFTIL LFPLMLKRER LYIPMMMILS IVLGYTAVYI
410 420 430 440 450
AGNRTLYSFY AVQLSPSVAS AFSISLFYLM REDLGDIVRR EWGSVLDRLF
460 470 480 490 500
RDEIELPEEI KPFLSLKGRS FYMLNMVLPV LISIIMHHNF YLPGSPVFST
510 520 530 540 550
NVRDFGLSGI LNDFLMRSSD KIWVRELIFS SITVISALII SLDLAELSAY
560 570 580 590 600
PIPISLLVLS GYDWTLLSLA LALESISLMR GGRRIISISL ALISCSLNPI
610 620 630 640 650
NILLFPLIFR KRISTIFAAS LIPLSLLSWP EEGTNGLLQG FAGAYAPTIA
660 670 680 690 700
LTISIILTAY LMRYSIFWSS VLGMGFMTLL SGIKQPWGLT ALALVSSSPS
710 720 730 740 750
IPLIELLLSL SLITYNNPSL LSGILFKCNP SGPKDACSDP SISMALFSLS
760 770
IIYLGLRGLY RENKIKLEVS YQE
Length:773
Mass (Da):86,521
Last modified:April 29, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7ED143DEA11F9CE4
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP000968 Genomic DNA Translation: ACB06959.1

NCBI Reference Sequences

More...
RefSeqi
WP_012308856.1, NC_010482.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ACB06959; ACB06959; Kcr_0199

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
6093488

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
kcr:Kcr_0199

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000968 Genomic DNA Translation: ACB06959.1
RefSeqiWP_012308856.1, NC_010482.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi374847.Kcr_0199

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACB06959; ACB06959; Kcr_0199
GeneIDi6093488
KEGGikcr:Kcr_0199

Phylogenomic databases

eggNOGiarCOG00561 Archaea
COG4346 LUCA
InParanoidiB1L3D0
OrthoDBi115811at2157

Enzyme and pathway databases

BioCyciCKOR374847:G1GBF-207-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR038731 RgtA/B/C-like
PfamiView protein in Pfam
PF13231 PMT_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB1L3D0_KORCO
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B1L3D0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: January 16, 2019
This is version 42 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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