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Protein

Ribosomal RNA large subunit methyltransferase F

Gene

rlmF

Organism
Shewanella woodyi (strain ATCC 51908 / MS32)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Specifically methylates the adenine in position 1618 of 23S rRNA.UniRule annotation

Catalytic activityi

S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N6-methyladenine(1618) in 23S rRNA.UniRule annotation

GO - Molecular functioni

Keywordsi

Molecular functionMethyltransferase, Transferase
Biological processrRNA processing
LigandS-adenosyl-L-methionine

Enzyme and pathway databases

BioCyciSWOO392500:G1GBD-5320-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA large subunit methyltransferase FUniRule annotation (EC:2.1.1.181UniRule annotation)
Alternative name(s):
23S rRNA mA1618 methyltransferaseUniRule annotation
rRNA adenine N-6-methyltransferaseUniRule annotation
Gene namesi
Name:rlmFUniRule annotation
Ordered Locus Names:Swoo_4824
OrganismiShewanella woodyi (strain ATCC 51908 / MS32)
Taxonomic identifieri392500 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
Proteomesi
  • UP000002168 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003499661 – 382Ribosomal RNA large subunit methyltransferase FAdd BLAST382

Interactioni

Protein-protein interaction databases

STRINGi392500.Swoo_4824

Structurei

3D structure databases

ProteinModelPortaliB1KP42
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the methyltransferase superfamily. METTL16/RlmF family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105EBA Bacteria
COG3129 LUCA
HOGENOMiHOG000218605
KOiK06970
OMAiTEFHQGH
OrthoDBiPOG091H05H4

Family and domain databases

HAMAPiMF_01848 23SrRNA_methyltr_F, 1 hit
InterProiView protein in InterPro
IPR016909 rRNA_lsu_MeTfrase_F
IPR010286 rRNA_lsu_MeTfrase_F-like
IPR029063 SAM-dependent_MTases
PANTHERiPTHR13393 PTHR13393, 1 hit
PfamiView protein in Pfam
PF05971 Methyltransf_10, 2 hits
PIRSFiPIRSF029038 Mtase_YbiN_prd, 1 hit
SUPFAMiSSF53335 SSF53335, 1 hit

Sequencei

Sequence statusi: Complete.

B1KP42-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTKPSSKASR KPVTKSGRNS KRSRSGSSKG DAQVARAINN QKPGLHPRNL
60 70 80 90 100
HRDGYDFDKL TKVSPVLTPY VQPNPYGNLS IDFADPQAVK ALNAAILKLD
110 120 130 140 150
YQIDNWDIPE GFLCPPIPGR VDYLHYIYDL LAGVEEFENK SETEMEGQNV
160 170 180 190 200
PPVNSHTIKP KKMKIKALDI GTGANAIYPL LGIQTYGWRF VASDVDPISL
210 220 230 240 250
ANVKAIVEGN NCLLGKLEVR LQNDHQKVFS GIIKPDDRFD ITLCNPPFHA
260 270 280 290 300
SLKEASEGSQ RKLKNLAENR ASKGHKLEPK APKDKSQLNF GGQKAELWCE
310 320 330 340 350
GGEKQFLHNM ICESKVFATQ CLWFTSLVSK KENLEACYTE LKRVGAITVK
360 370 380
TIDMAQGNKL TRVLAWSFLT PSQRGLWAKY RS
Length:382
Mass (Da):42,595
Last modified:April 29, 2008 - v1
Checksum:iFBC35B57C6769C31
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000961 Genomic DNA Translation: ACA89073.1
RefSeqiWP_012327390.1, NC_010506.1

Genome annotation databases

EnsemblBacteriaiACA89073; ACA89073; Swoo_4824
KEGGiswd:Swoo_4824

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000961 Genomic DNA Translation: ACA89073.1
RefSeqiWP_012327390.1, NC_010506.1

3D structure databases

ProteinModelPortaliB1KP42
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi392500.Swoo_4824

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACA89073; ACA89073; Swoo_4824
KEGGiswd:Swoo_4824

Phylogenomic databases

eggNOGiENOG4105EBA Bacteria
COG3129 LUCA
HOGENOMiHOG000218605
KOiK06970
OMAiTEFHQGH
OrthoDBiPOG091H05H4

Enzyme and pathway databases

BioCyciSWOO392500:G1GBD-5320-MONOMER

Family and domain databases

HAMAPiMF_01848 23SrRNA_methyltr_F, 1 hit
InterProiView protein in InterPro
IPR016909 rRNA_lsu_MeTfrase_F
IPR010286 rRNA_lsu_MeTfrase_F-like
IPR029063 SAM-dependent_MTases
PANTHERiPTHR13393 PTHR13393, 1 hit
PfamiView protein in Pfam
PF05971 Methyltransf_10, 2 hits
PIRSFiPIRSF029038 Mtase_YbiN_prd, 1 hit
SUPFAMiSSF53335 SSF53335, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRLMF_SHEWM
AccessioniPrimary (citable) accession number: B1KP42
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: April 29, 2008
Last modified: February 28, 2018
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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