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Protein

tRNA pseudouridine synthase D

Gene

truD

Organism
Pseudomonas putida (strain W619)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs.UniRule annotation

Catalytic activityi

tRNA uridine(13) = tRNA pseudouridine(13).UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei81NucleophileUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomerase
Biological processtRNA processing

Enzyme and pathway databases

BioCyciPPUT390235:G1GBA-4168-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase DUniRule annotation (EC:5.4.99.27UniRule annotation)
Alternative name(s):
tRNA pseudouridine(13) synthaseUniRule annotation
tRNA pseudouridylate synthase DUniRule annotation
tRNA-uridine isomerase DUniRule annotation
Gene namesi
Name:truDUniRule annotation
Ordered Locus Names:PputW619_4056
OrganismiPseudomonas putida (strain W619)
Taxonomic identifieri390235 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000720 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10001368461 – 352tRNA pseudouridine synthase DAdd BLAST352

Interactioni

Protein-protein interaction databases

STRINGi390235.PputW619_4056

Structurei

3D structure databases

ProteinModelPortaliB1JB31
SMRiB1JB31
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini157 – 303TRUDUniRule annotationAdd BLAST147

Sequence similaritiesi

Belongs to the pseudouridine synthase TruD family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4106NZV Bacteria
COG0585 LUCA
HOGENOMiHOG000224848
KOiK06176
OMAiGNRFFMR
OrthoDBiPOG091H03KK

Family and domain databases

HAMAPiMF_01082 TruD, 1 hit
InterProiView protein in InterPro
IPR020103 PsdUridine_synth_cat_dom_sf
IPR001656 PsdUridine_synth_TruD
IPR020119 PsdUridine_synth_TruD_CS
IPR011760 PsdUridine_synth_TruD_insert
PANTHERiPTHR13326 PTHR13326, 3 hits
PfamiView protein in Pfam
PF01142 TruD, 2 hits
SUPFAMiSSF55120 SSF55120, 1 hit
PROSITEiView protein in PROSITE
PS50984 TRUD, 1 hit
PS01268 UPF0024, 1 hit

Sequencei

Sequence statusi: Complete.

B1JB31-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTELELLGPR ASGQPLGTAI LKAVAEDFQV DEVLDIPLSG QGEHLWLWVE
60 70 80 90 100
KRDLNTEEAA RRLARAAGVP VRSISYAGLK DRQALTRQWF SLHLPGKADP
110 120 130 140 150
DLSRAEDATL RVLKQVRHQR KLQRGAHSAN GFTLRLTALA ADHAALDARL
160 170 180 190 200
QTLKQQGVPN YFGGQRFGHG GGNVQDAQHW AARKALPEQR NVRSRLLSAA
210 220 230 240 250
RSYLFNQVLA ARVADGSWQR AQVGDLLAFT DSRSFFSAGE QECSDPRLAI
260 270 280 290 300
LDLHPTGPMW GEGPSPAAGA ALTLETAIGQ QHALLCQWLA NAGMSHERRI
310 320 330 340 350
LRLPIGGLTW HYPEPDILQL EFVLPAGCFA TVVVRELVDL VPAGQTDSPC

VF
Length:352
Mass (Da):38,510
Last modified:April 29, 2008 - v1
Checksum:iFE13C2C619B9A00F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000949 Genomic DNA Translation: ACA74536.1
RefSeqiWP_012315876.1, NC_010501.1

Genome annotation databases

EnsemblBacteriaiACA74536; ACA74536; PputW619_4056
KEGGippw:PputW619_4056

Similar proteinsi

Entry informationi

Entry nameiTRUD_PSEPW
AccessioniPrimary (citable) accession number: B1JB31
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: April 29, 2008
Last modified: May 23, 2018
This is version 55 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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