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Protein
Submitted name:

Cdh4 protein

Gene

cdh4

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandCalciumSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Cdh4 proteinImported
Gene namesi
Name:cdh4Imported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana

Organism-specific databases

XenbaseiXB-GENE-958013 cdh4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei728 – 761HelicalSequence analysisAdd BLAST34

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24Sequence analysisAdd BLAST24
ChainiPRO_500276397425 – 769Sequence analysisAdd BLAST745

Structurei

3D structure databases

ProteinModelPortaliB1H2V0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini39 – 131Cadherin_proInterPro annotationAdd BLAST93
Domaini198 – 281CAInterPro annotationAdd BLAST84
Domaini305 – 396CAInterPro annotationAdd BLAST92
Domaini419 – 512CAInterPro annotationAdd BLAST94
Domaini535 – 619CAInterPro annotationAdd BLAST85
Domaini639 – 724CAInterPro annotationAdd BLAST86

Keywords - Domaini

RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

HOVERGENiHBG106438
KOiK06797

Family and domain databases

InterProiView protein in InterPro
IPR002126 Cadherin
IPR015919 Cadherin-like
IPR020894 Cadherin_CS
IPR014868 Cadherin_pro_dom
PfamiView protein in Pfam
PF00028 Cadherin, 5 hits
PF08758 Cadherin_pro, 1 hit
PRINTSiPR00205 CADHERIN
SMARTiView protein in SMART
SM00112 CA, 5 hits
SM01055 Cadherin_pro, 1 hit
SUPFAMiSSF49313 SSF49313, 7 hits
PROSITEiView protein in PROSITE
PS00232 CADHERIN_1, 2 hits

Sequencei

Sequence statusi: Complete.

B1H2V0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTGGPGSTPL FLLALSGALS GARSRALGAY DGNASVSRAC TPGFSAEGYT
60 70 80 90 100
ALVSPNIMEG QKLLKVKFTG CSSGARGIWY QTSNPDFKVG ADGAVYTART
110 120 130 140 150
VRIPAKEAMF TVSAWGHETP EKWEAAVRLL VEETPLNQSQ YGTGIQSRQS
160 170 180 190 200
EQEQSQSSTL LPWRQHHSGL RRQKRDWVIP PVNVPENSRG PFPEHLVRIR
210 220 230 240 250
SDKDRESMIR YSITGVGADQ PPMEIFSIDP ISGRMYVTRP LDREERSSYH
260 270 280 290 300
LRAHAVDMNG NKVENPIDLS IYVIDMNDNR PEFSSPIFNG SVDEVSKPGT
310 320 330 340 350
YVMTVTAHDA DDINTSNGIV MYRIMAQNPQ SPSQDMFVIH SETGVINTVA
360 370 380 390 400
AGLDREKVQQ YTVVIQATDM EGNLNHGLSN TATAIITVAD VNDNPPEFTN
410 420 430 440 450
KMFIGEVPEN RIDVVVANLT VVDRDQPYTP NWNAVYKIIS GDPAGHFTIK
460 470 480 490 500
TDPVTNEGIV TVAKPVDYEM NKAFLLNVMV TNQAPLASGI QMSLQSTAAV
510 520 530 540 550
TISITDVNEA PYFPNRNEPI RRLEGESPGR LLTTFSAVDP DRSMQQALRY
560 570 580 590 600
SKLSDPANWL TINTTNGQVF TTGVLDRESS FVKDDVYQAK FLATDNGVPP
610 620 630 640 650
ASGTGTLLIQ LIDINDNAPE LLPKEAQICE RPNGKGINIT ASDVDRKPSA
660 670 680 690 700
DPFVFELPSV PSSIRRNWTI SRINSNYARL SLHIGYLESG MYEVPVIVTD
710 720 730 740 750
SGNPPLYNTS VIKVKVCPCD DNGDCTSVGA VAAAGLGTGA IISILICIII
760
LLSMVLLFVM WMKSRETWG
Length:769
Mass (Da):84,041
Last modified:April 29, 2008 - v1
Checksum:i006D5FC08076458D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC161139 mRNA Translation: AAI61139.1
RefSeqiNP_001116951.1, NM_001123479.1
UniGeneiStr.88517

Genome annotation databases

GeneIDi100144729
KEGGixtr:100144729

Similar proteinsi

Entry informationi

Entry nameiB1H2V0_XENTR
AccessioniPrimary (citable) accession number: B1H2V0
Entry historyiIntegrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: February 28, 2018
This is version 61 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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