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Protein
Submitted name:

BLOC-1-related complex subunit 5

Gene

Borcs5

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
BLOC-1-related complex subunit 5Imported
Submitted name:
Loss of heterozygosity, 12, chromosomal region 1 homolog (Human)Imported
Submitted name:
Loss of heterozygosity, 12, chromosomal region 1 homolog (Human) (Predicted)Imported
Gene namesi
Name:Borcs5Imported
Synonyms:Loh12cr1Imported, Loh12cr1_predictedImported
ORF Names:rCG_30085Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 4

Organism-specific databases

RGDi1307624 Borcs5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000006505 Expressed in 9 organ(s), highest expression level in testis

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000008645

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili132 – 152Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG4515 Eukaryota
ENOG410YDKQ LUCA
GeneTreeiENSGT00390000015016
HOGENOMiHOG000007522
HOVERGENiHBG108081
KOiK20819
OMAiEPFSMRP
OrthoDBiEOG091G0OY0
TreeFamiTF316379

Family and domain databases

InterProiView protein in InterPro
IPR018780 TBORCS5
PANTHERiPTHR31634 PTHR31634, 1 hit
PfamiView protein in Pfam
PF10158 LOH1CR12, 1 hit

Sequencei

Sequence statusi: Complete.

B1H257-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGSEQSAEAE SRPGDLNASV TPSPAKHRAK MDDIVVVAQG SQASRNVSND
60 70 80 90 100
PDVIKLQEIP TFQPLLKGLL SGQTSPTNAR LEKLDSQQVL QLCLRYQDHL
110 120 130 140 150
HQCAEAVAFD QNALVKRIKE MDLSVETLFC FMQERQKRYA KYAEQIQKVN
160 170 180 190
EMSAILRRIQ MGIDQTVPLM ERLNSMLPEA ERLEPFSMRP ERERH
Length:195
Mass (Da):22,176
Last modified:April 29, 2008 - v1
Checksum:i53C69A7FAEF827D7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07062322 Genomic DNA No translation available.
BC160872 mRNA Translation: AAI60872.1
CH473964 Genomic DNA Translation: EDM01654.1
RefSeqiNP_001102120.1, NM_001108650.2
XP_008761616.1, XM_008763394.2
XP_008761617.1, XM_008763395.2
XP_017448198.1, XM_017592709.1
UniGeneiRn.53228
Rn.61437

Genome annotation databases

EnsembliENSRNOT00000008645; ENSRNOP00000008645; ENSRNOG00000006505
GeneIDi362452
KEGGirno:362452
UCSCiRGD:1307624 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07062322 Genomic DNA No translation available.
BC160872 mRNA Translation: AAI60872.1
CH473964 Genomic DNA Translation: EDM01654.1
RefSeqiNP_001102120.1, NM_001108650.2
XP_008761616.1, XM_008763394.2
XP_008761617.1, XM_008763395.2
XP_017448198.1, XM_017592709.1
UniGeneiRn.53228
Rn.61437

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000008645

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000008645; ENSRNOP00000008645; ENSRNOG00000006505
GeneIDi362452
KEGGirno:362452
UCSCiRGD:1307624 rat

Organism-specific databases

CTDi118426
RGDi1307624 Borcs5

Phylogenomic databases

eggNOGiKOG4515 Eukaryota
ENOG410YDKQ LUCA
GeneTreeiENSGT00390000015016
HOGENOMiHOG000007522
HOVERGENiHBG108081
KOiK20819
OMAiEPFSMRP
OrthoDBiEOG091G0OY0
TreeFamiTF316379

Gene expression databases

BgeeiENSRNOG00000006505 Expressed in 9 organ(s), highest expression level in testis

Family and domain databases

InterProiView protein in InterPro
IPR018780 TBORCS5
PANTHERiPTHR31634 PTHR31634, 1 hit
PfamiView protein in Pfam
PF10158 LOH1CR12, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiB1H257_RAT
AccessioniPrimary (citable) accession number: B1H257
Entry historyiIntegrated into UniProtKB/TrEMBL: April 29, 2008
Last sequence update: April 29, 2008
Last modified: September 12, 2018
This is version 79 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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