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Protein
Submitted name:

Vacuolar protein sorting 13D

Gene

Vps13d

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Vacuolar protein sorting 13DImported
Gene namesi
Name:Vps13dImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 4

Organism-specific databases

MGIiMGI:2448530 Vps13d

PTM / Processingi

Proteomic databases

MaxQBiB1ART1
PaxDbiB1ART1
PeptideAtlasiB1ART1
PRIDEiB1ART1

PTM databases

iPTMnetiB1ART1
PhosphoSitePlusiB1ART1

Expressioni

Gene expression databases

BgeeiENSMUSG00000020220 Expressed in 236 organ(s), highest expression level in intestine
ExpressionAtlasiB1ART1 baseline and differential
GenevisibleiB1ART1 MM

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000020441

Structurei

3D structure databases

ProteinModelPortaliB1ART1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2627 – 2670UBAInterPro annotationAdd BLAST44

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili100 – 120Sequence analysisAdd BLAST21
Coiled coili1295 – 1315Sequence analysisAdd BLAST21
Coiled coili3926 – 3946Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1796 Eukaryota
KOG1809 Eukaryota
COG5043 LUCA
GeneTreeiENSGT00410000025397
HOGENOMiHOG000046437
HOVERGENiHBG080098
TreeFamiTF300316

Family and domain databases

InterProiView protein in InterPro
IPR009543 SHR-BD
IPR015940 UBA
IPR009060 UBA-like_sf
IPR026847 VPS13
IPR031645 VPS13_C
IPR031642 VPS13_mid_rpt
IPR026854 VPS13_N
IPR031646 VPS13_N2
PANTHERiPTHR16166 PTHR16166, 2 hits
PfamiView protein in Pfam
PF12624 Chorein_N, 1 hit
PF06650 SHR-BD, 1 hit
PF00627 UBA, 1 hit
PF16908 VPS13, 1 hit
PF16909 VPS13_C, 1 hit
PF16910 VPS13_mid_rpt, 1 hit
SMARTiView protein in SMART
SM00165 UBA, 1 hit
SUPFAMiSSF46934 SSF46934, 1 hit
PROSITEiView protein in PROSITE
PS50030 UBA, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

B1ART1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLEGLVAWVL NTYLGKYVNN LNTDQLSVAL LKGAVELENL PLKKDALKEL
60 70 80 90 100
ELPFEVKAGL IGKVTLQIPF YRPHVDPWVI SISGLHVIGG PEKIQDFNDE
110 120 130 140 150
KEKLLERERK KALLQALEER WKKGEPYWYS VTASVVTRIV ENIELKIQDV
160 170 180 190 200
HLRFEDGVTN PSRPFAFGIC IKNVSMQNAA NEPVQKLMRK KRLDVAEFSI
210 220 230 240 250
YWDVNCTLLG DLPQAELQEA MARSMESRSH HYILEPVCAS ALLKRNCSKE
260 270 280 290 300
PLRSRHSPRI ECDIQLETIP LKLSQLQYRQ IMAFLKELER KERQLKFRKW
310 320 330 340 350
KPKVAVSKNC REWWYFALNA NLYEIREQRK CWTWDFLLHR ARDAVFYTDR
360 370 380 390 400
YFNKLKGGVL SADDKEEMCR IEEEQSFEEL KILRELVHDR FYKQEELAES
410 420 430 440 450
LREPQFDSPG TSPGDPDGSG GSGMLQYLQS WFPGWGGWYG QQSPEGKVVE
460 470 480 490 500
GLTAESHEHW TPEEILGTEE FFDPTADASC MNTYTKRDHV FAKLNVQLQR
510 520 530 540 550
GTVTLLHKEQ GTAHANESAF MQLEFSDVKL LAESLPRRNS SLLLVRLGGL
560 570 580 590 600
FLRDLATEGT MFPLLVFPNP QKEVGRVSQS FGLQTASEDR SDQYSAADPD
610 620 630 640 650
NPVFEMLYER NPVHSHFERR LHVSTRPLNI IYNPQAIKKV ADFFYKGKVH
660 670 680 690 700
TSGFGYQSEL ELRVAEAARR QYDKLKVQTK AEIRQTLDRL LVGDFIEESK
710 720 730 740 750
RWTVRLDISA PQVIFPDDFT FKNPVLVVVD LGRMLLTNTQ EDSRRKSGDG
760 770 780 790 800
SASEENQFSD DEYKTPLATP PSTPPPETSS SNGEKTPPFS GVEFSEEQLQ
810 820 830 840 850
AHLMSTQMYE RYSLTFMDLQ VMVGRVRDNW KRVQDIDVGP THVVEKFNVH
860 870 880 890 900
LQLERRLIYT SDPKYPGAVL SGNLPDLKIH INEDKISALK NCFALLTTPE
910 920 930 940 950
TKPSDTQIRE KIFPQEGPRG SLQDSVMNLT QSIVMLEQHT REVLVESQLL
960 970 980 990 1000
LAEFKVNCMQ LGVESSGRYI SVLKVFGTNA HFVKRPYDAE VSLTVHGLLL
1010 1020 1030 1040 1050
VDTMQTYGAD FDLLMASHKN LSFDIPTGSL RDSRAQSPVS GPNVAFQTDV
1060 1070 1080 1090 1100
TTLNDQSATS VSLEKILTKE QESLIKLEYQ FVSSECPSMN LDSTLQVISL
1110 1120 1130 1140 1150
QVNNLDIILN PETIVELIGF LQKSFPKEKD DVSPQPLMTD LERSIVEQGT
1160 1170 1180 1190 1200
IQSTYEQNTE VAVEIHRLNL LLLRTVGMAD GERHGRKIAT ASIGGTKVNV
1210 1220 1230 1240 1250
SMGSSFDMNG SLGCLQLMDL TQENVKSQYV VSIGNSVGYE NIVSDIGYFE
1260 1270 1280 1290 1300
SVFVRMEDAA LTEALSFTFA EKSKQECFLN LKMASLHYNH SAKFLKELTL
1310 1320 1330 1340 1350
SMDELEENFR SMLKSAATKV TTVLATKTAE YSEMVSLFET PKKTREPFVL
1360 1370 1380 1390 1400
EENEIYGFGL PSPRSDTVKL ILNINIESPV VSIPRRPGSP ELLVGHLGQI
1410 1420 1430 1440 1450
FIQNFVAGDD DSRSDRLQVE IKDIKLYSLN CTQLAGRDNA GPEVNRTFCP
1460 1470 1480 1490 1500
PSGLASVNSQ EEAHFTRHDF FESLHRGQAF HILNNTTIQF KLEKIPIERE
1510 1520 1530 1540 1550
SELTFSLSPD ELGTSSIMKI EGKFVNPVQV VLAKHVYEQV LQTMDNLVYS
1560 1570 1580 1590 1600
EDLNKFAASA PTSPCPNSPL PQLSSCGEPC VEKKENGLFS HSSFSSTSQK
1610 1620 1630 1640 1650
SLSVKEAKAF TQIQANFCIS ELQVQLSGDL TLGAQGLVSL KFQDFEVEFS
1660 1670 1680 1690 1700
KDHPQTLSIQ IALRSLLMED LLEKNPDSKY KSLMVSRGAP KPSSLAQKEY
1710 1720 1730 1740 1750
LSQSCPSVSS VEYPDMPRSL PSHMEEAPNV FQLYQRPIST CRKKPKEAQD
1760 1770 1780 1790 1800
KSYPQTPPPS PSVDEPNMLV GKSKFDDSLV HINIFLVDKK HPEFSSSYGR
1810 1820 1830 1840 1850
INRSIDVDFN CLDVLITLQT WVVILDFFGI GSTADNHAMK VPPEGLLQNV
1860 1870 1880 1890 1900
KAESSASMES EHQEPVNSKL DLKVHSLSLV LSKATSELAK ANVSKLMAHM
1910 1920 1930 1940 1950
EMIEGDLALQ GSIGSLSLSD LTPHGDFYRE RFTTSGEEAL IFQTFKYGQP
1960 1970 1980 1990 2000
DPLLQREHDI RVSLQMASVQ YVHTQRFQAE VVAFIQHFTQ LQDILGRQRA
2010 2020 2030 2040 2050
AIEGQTVRDQ AQRCSRILLD IEAGAPVLLI PESSRSNNLI VANLGKLKVK
2060 2070 2080 2090 2100
NKFLFAGFPG TFSLQDKESV PSASPAGTPK HSMRKMTTTE DPKGPQVQGL
2110 2120 2130 2140 2150
FMMPPAGVGL GSLKSDFVPS ASIKQRGQQA VPPVSQSSSS PEDHVCLLDC
2160 2170 2180 2190 2200
IVVDLQDMDI FAAERHPREG SKASEHSSGD LIFPSYFVRQ TGGSLLTEPC
2210 2220 2230 2240 2250
RLKLQVERNL DKEISHTVAD ISVHGSLSSV HCSLDLCKYK LIRGLLENNL
2260 2270 2280 2290 2300
GEPIEDFMRP YDLQDPRIHT VLSGEVYTCM CFLIDMVNVS LELKDPKGKE
2310 2320 2330 2340 2350
GTGSLARFDF KKCKLLYESF SNQTKSINLV SHSMMAFDTR YSGQKPSHGM
2360 2370 2380 2390 2400
TNVFNCIFQP SKSSSATQGS IQIELHFRST KDSSCFTVVL NNLRVFLIFD
2410 2420 2430 2440 2450
WLLLVHDFLH TPSDIKKQNV TPARHRNASS ESAVVPKTVK SGVVTKRSSL
2460 2470 2480 2490 2500
PVSNERHLEV KVNVTGTEFV VVEDVSCFDT NAIILKGTTV LTYKPRFVDR
2510 2520 2530 2540 2550
PFSGSLFGIE VFSCRLGNEQ DTALSIVDPV QIQVELVGNS SYQNSSGLMD
2560 2570 2580 2590 2600
AFNSEDFPPI LEIQLQALDI RLSYNDVQLF LAIAKSIPEQ ASAAAPDSSA
2610 2620 2630 2640 2650
LEVDSISCSL PGASRIGEDV REGSRHTLDP VLELQLARLQ ELGFSMDDCR
2660 2670 2680 2690 2700
KALLVCQGQL KKAASWLFKN AEPLKSLSLV SSSSRDNPGT MPAPRISGVE
2710 2720 2730 2740 2750
VKAESVCICF IDDCMDCDVP LAELTFSRLN FLQHIRTNPE GFAHFTLSGD
2760 2770 2780 2790 2800
YYNRALSGWE PFIEPWPCSV SWQQQASSRL HPPRLKLEAK AKRRLDINIT
2810 2820 2830 2840 2850
SVLIDQYIST KESWLADYCK EDKETESAKT EDWMGSSVDP PCFGQTEVKT
2860 2870 2880 2890 2900
PKRRQPFVPF ALRNHTGCTL WFATLTTTPT RAALSHSGSP GVVPEGNGAF
2910 2920 2930 2940 2950
LDDAHNVSEW REVLTGEEIP FEFEARGKLR HRHTHDLRIH QLQVRVNGWE
2960 2970 2980 2990 3000
QVSPVSVDKV GTFFRYAAPD KNSSSSTIGS PSSRTNIIHP QVYFSSLPPV
3010 3020 3030 3040 3050
RVVFAVTMEG SARKVITVRS ALIVKNRLET PMELRLDSPS APDKPVVLPA
3060 3070 3080 3090 3100
IMPGDSFAVP LHLTSWRLQA RPKGMGVFFC KVPIHWTNVV KTAEVSSSKR
3110 3120 3130 3140 3150
ECHSMDTEKS RFFRFCVAIK KENYPDYMPS NIFSDSAKQI FRQPGHTIYL
3160 3170 3180 3190 3200
LPTVVICNLL PCELDFYVKG MPINGTLKPG KEAALPTADT SQNIELGVSL
3210 3220 3230 3240 3250
ENFPLCKELL IPPGTQNYMV RMRLYDVNRR QLNLTIRIAC RAEGSLKIFI
3260 3270 3280 3290 3300
SAPYWLINKT GLPLIFRQDN AKTDAAGQFE EHELARSLSP LLFCYADKEQ
3310 3320 3330 3340 3350
PNLCTMRIGR GIHPEGMPGW CQGFSLDGGS GVRALKVIQQ GNRPGLIYNI
3360 3370 3380 3390 3400
GIDVKKGRGR YIDTCMVIFA PRYLLDNKSS HKLAFAQREF ARGQGTANPN
3410 3420 3430 3440 3450
GYISTLPGSS VVFHWPRNDY DQLLCVRLMD VPNCIWSGGF EVNKNNSFHI
3460 3470 3480 3490 3500
NMRDTLGKCF FLRVEITLRG ATYRISFSDT DQLPPPFRID NFSKVPVVFT
3510 3520 3530 3540 3550
QHGVAEPRLR TEVKPMMSLD YAWDEPTLPP FITLTVKGAG SSEINCNMND
3560 3570 3580 3590 3600
FQNNRQLYYE NFIYIAATYT FSGLQEGKGR PVASHKAITC AELVLDVSPK
3610 3620 3630 3640 3650
TQRVILKKKE PGKRSQLWRM TGTGMLAHEG SAVPHNPNKP SATRSIEGSA
3660 3670 3680 3690 3700
ILDIAGLAAV TDNRYEPLML RKPDRRRSTT QTWSFHEGKL TCGLHGLVVQ
3710 3720 3730 3740 3750
AKGGLSGLFD GAEVVLGPDS SMELLGPVPP EQQFANQKMR PGSGMLSIRV
3760 3770 3780 3790 3800
IPDGPTRALQ ITDFCQRKSE RSSYEVEELP VTEQELQKLR NPDTHQELEV
3810 3820 3830 3840 3850
LVRLEGGVGV SLINKVPEEL VFASLTGINI HYTQLAASHM LELSIQDVQV
3860 3870 3880 3890 3900
DNQLIGTTQP FMLYVTPLSN ENEVIETGPA VQVNAVKFPS KSALTNIYKH
3910 3920 3930 3940 3950
LMVTAQRFTV QIEEKLLLKL LSFFGYDQAE SEVEKYDENI HEKTAEQGGT
3960 3970 3980 3990 4000
PTRYYFENLK ISIPQIKLSV FTSNKLPLDL KALKSTLGFP LIRFEDAVIN
4010 4020 4030 4040 4050
LDPFTRVHPY ETKEFIINDI LKHFQEELLS QAARILGSVD FLGNPMGLLN
4060 4070 4080 4090 4100
DVSEGVTGLI KYGNVGGLIR NVTHGVSNSA AKFAGTLSDG LGKTMDNRHQ
4110 4120 4130 4140 4150
SEREYIRYHA ATSGEHLVAG IHGLAHGIIG GLTSVITSTV EGVKTEGGVS
4160 4170 4180 4190 4200
GFISGLGKGL VGTVTKPVAG ALDFASETAQ AVRDTATLSG PRTQAQRVRK
4210 4220 4230 4240 4250
PRCCTGPQGL LPRYSESQAE GQEQLFKLTD NIQDEFFIAV ENIDSYCVLI
4260 4270 4280 4290 4300
SSKAVYFLKS GDYVDREAIF LEVKYDDLYH CLVSKDHGKV YVQVTKKAAN
4310 4320 4330 4340 4350
SSSGVSIPGP SHQKPMVHVK SEVLAVKLSQ EINYAKSLYY EQQLMLRLSE

NQEQLELDS
Length:4,359
Mass (Da):487,329
Last modified:April 8, 2008 - v1
Checksum:iEC033FCF3F755E06
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
B1ART2B1ART2_MOUSE
Vacuolar protein sorting 13D
Vps13d
4,390Annotation score:
V9GX23V9GX23_MOUSE
Vacuolar protein sorting 13D
Vps13d
3,211Annotation score:
F6XI52F6XI52_MOUSE
Vacuolar protein sorting 13D
Vps13d
1,078Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606909 Genomic DNA No translation available.
AL627087 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSMUST00000020441; ENSMUSP00000020441; ENSMUSG00000020220

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606909 Genomic DNA No translation available.
AL627087 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliB1ART1
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000020441

PTM databases

iPTMnetiB1ART1
PhosphoSitePlusiB1ART1

Proteomic databases

MaxQBiB1ART1
PaxDbiB1ART1
PeptideAtlasiB1ART1
PRIDEiB1ART1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000020441; ENSMUSP00000020441; ENSMUSG00000020220

Organism-specific databases

MGIiMGI:2448530 Vps13d

Phylogenomic databases

eggNOGiKOG1796 Eukaryota
KOG1809 Eukaryota
COG5043 LUCA
GeneTreeiENSGT00410000025397
HOGENOMiHOG000046437
HOVERGENiHBG080098
TreeFamiTF300316

Miscellaneous databases

ChiTaRSiVps13d mouse
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000020220 Expressed in 236 organ(s), highest expression level in intestine
ExpressionAtlasiB1ART1 baseline and differential
GenevisibleiB1ART1 MM

Family and domain databases

InterProiView protein in InterPro
IPR009543 SHR-BD
IPR015940 UBA
IPR009060 UBA-like_sf
IPR026847 VPS13
IPR031645 VPS13_C
IPR031642 VPS13_mid_rpt
IPR026854 VPS13_N
IPR031646 VPS13_N2
PANTHERiPTHR16166 PTHR16166, 2 hits
PfamiView protein in Pfam
PF12624 Chorein_N, 1 hit
PF06650 SHR-BD, 1 hit
PF00627 UBA, 1 hit
PF16908 VPS13, 1 hit
PF16909 VPS13_C, 1 hit
PF16910 VPS13_mid_rpt, 1 hit
SMARTiView protein in SMART
SM00165 UBA, 1 hit
SUPFAMiSSF46934 SSF46934, 1 hit
PROSITEiView protein in PROSITE
PS50030 UBA, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiB1ART1_MOUSE
AccessioniPrimary (citable) accession number: B1ART1
Entry historyiIntegrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: September 12, 2018
This is version 80 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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