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Protein
Submitted name:

Vacuolar protein sorting 13D

Gene

Vps13d

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

  • protein retention in Golgi apparatus Source: GO_Central
  • protein targeting to vacuole Source: GO_Central

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Vacuolar protein sorting 13DImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Vps13dImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:2448530 Vps13d

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

MaxQB - The MaxQuant DataBase

More...
MaxQBi
B1ART1

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
B1ART1

PeptideAtlas

More...
PeptideAtlasi
B1ART1

PRoteomics IDEntifications database

More...
PRIDEi
B1ART1

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
B1ART1

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
B1ART1

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000020220 Expressed in 236 organ(s), highest expression level in intestine

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
B1ART1 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
B1ART1 MM

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000020441

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
B1ART1

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
B1ART1

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini2627 – 2670UBAInterPro annotationAdd BLAST44

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili100 – 120Sequence analysisAdd BLAST21
Coiled coili1295 – 1315Sequence analysisAdd BLAST21
Coiled coili3926 – 3946Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1796 Eukaryota
KOG1809 Eukaryota
COG5043 LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000153521

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000046437

The HOVERGEN Database of Homologous Vertebrate Genes

More...
HOVERGENi
HBG080098

TreeFam database of animal gene trees

More...
TreeFami
TF300316

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR009543 SHR-BD
IPR015940 UBA
IPR009060 UBA-like_sf
IPR026847 VPS13
IPR031645 VPS13_C
IPR031642 VPS13_mid_rpt
IPR026854 VPS13_N
IPR031646 VPS13_N2

The PANTHER Classification System

More...
PANTHERi
PTHR16166 PTHR16166, 2 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF12624 Chorein_N, 1 hit
PF06650 SHR-BD, 1 hit
PF16908 VPS13, 1 hit
PF16909 VPS13_C, 1 hit
PF16910 VPS13_mid_rpt, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00165 UBA, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF46934 SSF46934, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50030 UBA, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

B1ART1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLEGLVAWVL NTYLGKYVNN LNTDQLSVAL LKGAVELENL PLKKDALKEL
60 70 80 90 100
ELPFEVKAGL IGKVTLQIPF YRPHVDPWVI SISGLHVIGG PEKIQDFNDE
110 120 130 140 150
KEKLLERERK KALLQALEER WKKGEPYWYS VTASVVTRIV ENIELKIQDV
160 170 180 190 200
HLRFEDGVTN PSRPFAFGIC IKNVSMQNAA NEPVQKLMRK KRLDVAEFSI
210 220 230 240 250
YWDVNCTLLG DLPQAELQEA MARSMESRSH HYILEPVCAS ALLKRNCSKE
260 270 280 290 300
PLRSRHSPRI ECDIQLETIP LKLSQLQYRQ IMAFLKELER KERQLKFRKW
310 320 330 340 350
KPKVAVSKNC REWWYFALNA NLYEIREQRK CWTWDFLLHR ARDAVFYTDR
360 370 380 390 400
YFNKLKGGVL SADDKEEMCR IEEEQSFEEL KILRELVHDR FYKQEELAES
410 420 430 440 450
LREPQFDSPG TSPGDPDGSG GSGMLQYLQS WFPGWGGWYG QQSPEGKVVE
460 470 480 490 500
GLTAESHEHW TPEEILGTEE FFDPTADASC MNTYTKRDHV FAKLNVQLQR
510 520 530 540 550
GTVTLLHKEQ GTAHANESAF MQLEFSDVKL LAESLPRRNS SLLLVRLGGL
560 570 580 590 600
FLRDLATEGT MFPLLVFPNP QKEVGRVSQS FGLQTASEDR SDQYSAADPD
610 620 630 640 650
NPVFEMLYER NPVHSHFERR LHVSTRPLNI IYNPQAIKKV ADFFYKGKVH
660 670 680 690 700
TSGFGYQSEL ELRVAEAARR QYDKLKVQTK AEIRQTLDRL LVGDFIEESK
710 720 730 740 750
RWTVRLDISA PQVIFPDDFT FKNPVLVVVD LGRMLLTNTQ EDSRRKSGDG
760 770 780 790 800
SASEENQFSD DEYKTPLATP PSTPPPETSS SNGEKTPPFS GVEFSEEQLQ
810 820 830 840 850
AHLMSTQMYE RYSLTFMDLQ VMVGRVRDNW KRVQDIDVGP THVVEKFNVH
860 870 880 890 900
LQLERRLIYT SDPKYPGAVL SGNLPDLKIH INEDKISALK NCFALLTTPE
910 920 930 940 950
TKPSDTQIRE KIFPQEGPRG SLQDSVMNLT QSIVMLEQHT REVLVESQLL
960 970 980 990 1000
LAEFKVNCMQ LGVESSGRYI SVLKVFGTNA HFVKRPYDAE VSLTVHGLLL
1010 1020 1030 1040 1050
VDTMQTYGAD FDLLMASHKN LSFDIPTGSL RDSRAQSPVS GPNVAFQTDV
1060 1070 1080 1090 1100
TTLNDQSATS VSLEKILTKE QESLIKLEYQ FVSSECPSMN LDSTLQVISL
1110 1120 1130 1140 1150
QVNNLDIILN PETIVELIGF LQKSFPKEKD DVSPQPLMTD LERSIVEQGT
1160 1170 1180 1190 1200
IQSTYEQNTE VAVEIHRLNL LLLRTVGMAD GERHGRKIAT ASIGGTKVNV
1210 1220 1230 1240 1250
SMGSSFDMNG SLGCLQLMDL TQENVKSQYV VSIGNSVGYE NIVSDIGYFE
1260 1270 1280 1290 1300
SVFVRMEDAA LTEALSFTFA EKSKQECFLN LKMASLHYNH SAKFLKELTL
1310 1320 1330 1340 1350
SMDELEENFR SMLKSAATKV TTVLATKTAE YSEMVSLFET PKKTREPFVL
1360 1370 1380 1390 1400
EENEIYGFGL PSPRSDTVKL ILNINIESPV VSIPRRPGSP ELLVGHLGQI
1410 1420 1430 1440 1450
FIQNFVAGDD DSRSDRLQVE IKDIKLYSLN CTQLAGRDNA GPEVNRTFCP
1460 1470 1480 1490 1500
PSGLASVNSQ EEAHFTRHDF FESLHRGQAF HILNNTTIQF KLEKIPIERE
1510 1520 1530 1540 1550
SELTFSLSPD ELGTSSIMKI EGKFVNPVQV VLAKHVYEQV LQTMDNLVYS
1560 1570 1580 1590 1600
EDLNKFAASA PTSPCPNSPL PQLSSCGEPC VEKKENGLFS HSSFSSTSQK
1610 1620 1630 1640 1650
SLSVKEAKAF TQIQANFCIS ELQVQLSGDL TLGAQGLVSL KFQDFEVEFS
1660 1670 1680 1690 1700
KDHPQTLSIQ IALRSLLMED LLEKNPDSKY KSLMVSRGAP KPSSLAQKEY
1710 1720 1730 1740 1750
LSQSCPSVSS VEYPDMPRSL PSHMEEAPNV FQLYQRPIST CRKKPKEAQD
1760 1770 1780 1790 1800
KSYPQTPPPS PSVDEPNMLV GKSKFDDSLV HINIFLVDKK HPEFSSSYGR
1810 1820 1830 1840 1850
INRSIDVDFN CLDVLITLQT WVVILDFFGI GSTADNHAMK VPPEGLLQNV
1860 1870 1880 1890 1900
KAESSASMES EHQEPVNSKL DLKVHSLSLV LSKATSELAK ANVSKLMAHM
1910 1920 1930 1940 1950
EMIEGDLALQ GSIGSLSLSD LTPHGDFYRE RFTTSGEEAL IFQTFKYGQP
1960 1970 1980 1990 2000
DPLLQREHDI RVSLQMASVQ YVHTQRFQAE VVAFIQHFTQ LQDILGRQRA
2010 2020 2030 2040 2050
AIEGQTVRDQ AQRCSRILLD IEAGAPVLLI PESSRSNNLI VANLGKLKVK
2060 2070 2080 2090 2100
NKFLFAGFPG TFSLQDKESV PSASPAGTPK HSMRKMTTTE DPKGPQVQGL
2110 2120 2130 2140 2150
FMMPPAGVGL GSLKSDFVPS ASIKQRGQQA VPPVSQSSSS PEDHVCLLDC
2160 2170 2180 2190 2200
IVVDLQDMDI FAAERHPREG SKASEHSSGD LIFPSYFVRQ TGGSLLTEPC
2210 2220 2230 2240 2250
RLKLQVERNL DKEISHTVAD ISVHGSLSSV HCSLDLCKYK LIRGLLENNL
2260 2270 2280 2290 2300
GEPIEDFMRP YDLQDPRIHT VLSGEVYTCM CFLIDMVNVS LELKDPKGKE
2310 2320 2330 2340 2350
GTGSLARFDF KKCKLLYESF SNQTKSINLV SHSMMAFDTR YSGQKPSHGM
2360 2370 2380 2390 2400
TNVFNCIFQP SKSSSATQGS IQIELHFRST KDSSCFTVVL NNLRVFLIFD
2410 2420 2430 2440 2450
WLLLVHDFLH TPSDIKKQNV TPARHRNASS ESAVVPKTVK SGVVTKRSSL
2460 2470 2480 2490 2500
PVSNERHLEV KVNVTGTEFV VVEDVSCFDT NAIILKGTTV LTYKPRFVDR
2510 2520 2530 2540 2550
PFSGSLFGIE VFSCRLGNEQ DTALSIVDPV QIQVELVGNS SYQNSSGLMD
2560 2570 2580 2590 2600
AFNSEDFPPI LEIQLQALDI RLSYNDVQLF LAIAKSIPEQ ASAAAPDSSA
2610 2620 2630 2640 2650
LEVDSISCSL PGASRIGEDV REGSRHTLDP VLELQLARLQ ELGFSMDDCR
2660 2670 2680 2690 2700
KALLVCQGQL KKAASWLFKN AEPLKSLSLV SSSSRDNPGT MPAPRISGVE
2710 2720 2730 2740 2750
VKAESVCICF IDDCMDCDVP LAELTFSRLN FLQHIRTNPE GFAHFTLSGD
2760 2770 2780 2790 2800
YYNRALSGWE PFIEPWPCSV SWQQQASSRL HPPRLKLEAK AKRRLDINIT
2810 2820 2830 2840 2850
SVLIDQYIST KESWLADYCK EDKETESAKT EDWMGSSVDP PCFGQTEVKT
2860 2870 2880 2890 2900
PKRRQPFVPF ALRNHTGCTL WFATLTTTPT RAALSHSGSP GVVPEGNGAF
2910 2920 2930 2940 2950
LDDAHNVSEW REVLTGEEIP FEFEARGKLR HRHTHDLRIH QLQVRVNGWE
2960 2970 2980 2990 3000
QVSPVSVDKV GTFFRYAAPD KNSSSSTIGS PSSRTNIIHP QVYFSSLPPV
3010 3020 3030 3040 3050
RVVFAVTMEG SARKVITVRS ALIVKNRLET PMELRLDSPS APDKPVVLPA
3060 3070 3080 3090 3100
IMPGDSFAVP LHLTSWRLQA RPKGMGVFFC KVPIHWTNVV KTAEVSSSKR
3110 3120 3130 3140 3150
ECHSMDTEKS RFFRFCVAIK KENYPDYMPS NIFSDSAKQI FRQPGHTIYL
3160 3170 3180 3190 3200
LPTVVICNLL PCELDFYVKG MPINGTLKPG KEAALPTADT SQNIELGVSL
3210 3220 3230 3240 3250
ENFPLCKELL IPPGTQNYMV RMRLYDVNRR QLNLTIRIAC RAEGSLKIFI
3260 3270 3280 3290 3300
SAPYWLINKT GLPLIFRQDN AKTDAAGQFE EHELARSLSP LLFCYADKEQ
3310 3320 3330 3340 3350
PNLCTMRIGR GIHPEGMPGW CQGFSLDGGS GVRALKVIQQ GNRPGLIYNI
3360 3370 3380 3390 3400
GIDVKKGRGR YIDTCMVIFA PRYLLDNKSS HKLAFAQREF ARGQGTANPN
3410 3420 3430 3440 3450
GYISTLPGSS VVFHWPRNDY DQLLCVRLMD VPNCIWSGGF EVNKNNSFHI
3460 3470 3480 3490 3500
NMRDTLGKCF FLRVEITLRG ATYRISFSDT DQLPPPFRID NFSKVPVVFT
3510 3520 3530 3540 3550
QHGVAEPRLR TEVKPMMSLD YAWDEPTLPP FITLTVKGAG SSEINCNMND
3560 3570 3580 3590 3600
FQNNRQLYYE NFIYIAATYT FSGLQEGKGR PVASHKAITC AELVLDVSPK
3610 3620 3630 3640 3650
TQRVILKKKE PGKRSQLWRM TGTGMLAHEG SAVPHNPNKP SATRSIEGSA
3660 3670 3680 3690 3700
ILDIAGLAAV TDNRYEPLML RKPDRRRSTT QTWSFHEGKL TCGLHGLVVQ
3710 3720 3730 3740 3750
AKGGLSGLFD GAEVVLGPDS SMELLGPVPP EQQFANQKMR PGSGMLSIRV
3760 3770 3780 3790 3800
IPDGPTRALQ ITDFCQRKSE RSSYEVEELP VTEQELQKLR NPDTHQELEV
3810 3820 3830 3840 3850
LVRLEGGVGV SLINKVPEEL VFASLTGINI HYTQLAASHM LELSIQDVQV
3860 3870 3880 3890 3900
DNQLIGTTQP FMLYVTPLSN ENEVIETGPA VQVNAVKFPS KSALTNIYKH
3910 3920 3930 3940 3950
LMVTAQRFTV QIEEKLLLKL LSFFGYDQAE SEVEKYDENI HEKTAEQGGT
3960 3970 3980 3990 4000
PTRYYFENLK ISIPQIKLSV FTSNKLPLDL KALKSTLGFP LIRFEDAVIN
4010 4020 4030 4040 4050
LDPFTRVHPY ETKEFIINDI LKHFQEELLS QAARILGSVD FLGNPMGLLN
4060 4070 4080 4090 4100
DVSEGVTGLI KYGNVGGLIR NVTHGVSNSA AKFAGTLSDG LGKTMDNRHQ
4110 4120 4130 4140 4150
SEREYIRYHA ATSGEHLVAG IHGLAHGIIG GLTSVITSTV EGVKTEGGVS
4160 4170 4180 4190 4200
GFISGLGKGL VGTVTKPVAG ALDFASETAQ AVRDTATLSG PRTQAQRVRK
4210 4220 4230 4240 4250
PRCCTGPQGL LPRYSESQAE GQEQLFKLTD NIQDEFFIAV ENIDSYCVLI
4260 4270 4280 4290 4300
SSKAVYFLKS GDYVDREAIF LEVKYDDLYH CLVSKDHGKV YVQVTKKAAN
4310 4320 4330 4340 4350
SSSGVSIPGP SHQKPMVHVK SEVLAVKLSQ EINYAKSLYY EQQLMLRLSE

NQEQLELDS
Length:4,359
Mass (Da):487,329
Last modified:April 8, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEC033FCF3F755E06
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
B1ART2B1ART2_MOUSE
Vacuolar protein sorting 13D
Vps13d
4,390Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
V9GX23V9GX23_MOUSE
Vacuolar protein sorting 13D
Vps13d
3,211Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
F6XI52F6XI52_MOUSE
Vacuolar protein sorting 13D
Vps13d
1,078Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL606909 Genomic DNA No translation available.
AL627087 Genomic DNA No translation available.

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000020441; ENSMUSP00000020441; ENSMUSG00000020220

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606909 Genomic DNA No translation available.
AL627087 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliB1ART1
SMRiB1ART1
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000020441

PTM databases

iPTMnetiB1ART1
PhosphoSitePlusiB1ART1

Proteomic databases

MaxQBiB1ART1
PaxDbiB1ART1
PeptideAtlasiB1ART1
PRIDEiB1ART1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000020441; ENSMUSP00000020441; ENSMUSG00000020220

Organism-specific databases

MGIiMGI:2448530 Vps13d

Phylogenomic databases

eggNOGiKOG1796 Eukaryota
KOG1809 Eukaryota
COG5043 LUCA
GeneTreeiENSGT00940000153521
HOGENOMiHOG000046437
HOVERGENiHBG080098
TreeFamiTF300316

Miscellaneous databases

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

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ChiTaRSi
Vps13d mouse

The Stanford Online Universal Resource for Clones and ESTs

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SOURCEi
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Gene expression databases

BgeeiENSMUSG00000020220 Expressed in 236 organ(s), highest expression level in intestine
ExpressionAtlasiB1ART1 baseline and differential
GenevisibleiB1ART1 MM

Family and domain databases

InterProiView protein in InterPro
IPR009543 SHR-BD
IPR015940 UBA
IPR009060 UBA-like_sf
IPR026847 VPS13
IPR031645 VPS13_C
IPR031642 VPS13_mid_rpt
IPR026854 VPS13_N
IPR031646 VPS13_N2
PANTHERiPTHR16166 PTHR16166, 2 hits
PfamiView protein in Pfam
PF12624 Chorein_N, 1 hit
PF06650 SHR-BD, 1 hit
PF16908 VPS13, 1 hit
PF16909 VPS13_C, 1 hit
PF16910 VPS13_mid_rpt, 1 hit
SMARTiView protein in SMART
SM00165 UBA, 1 hit
SUPFAMiSSF46934 SSF46934, 1 hit
PROSITEiView protein in PROSITE
PS50030 UBA, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiB1ART1_MOUSE
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: B1ART1
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: December 5, 2018
This is version 82 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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