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Protein
Submitted name:

Hairy-related 4, tandem duplicate 4

Gene

her4.4

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

  • peripheral nervous system neuron axonogenesis Source: ZFIN
  • regulation of transcription, DNA-templated Source: UniProtKB-UniRule
  • transcription, DNA-templated Source: UniProtKB-UniRule

Keywordsi

Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Hairy-related 4, tandem duplicate 4Imported
Gene namesi
Name:her4.4Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 23

Organism-specific databases

ZFINiZDB-GENE-081031-104 her4.4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiB0V3D3

Expressioni

Gene expression databases

BgeeiENSDARG00000009822

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000073721

Structurei

3D structure databases

ProteinModelPortaliB0V3D3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini17 – 73BHLHInterPro annotationAdd BLAST57
Domaini79 – 111OrangeInterPro annotationAdd BLAST33

Phylogenomic databases

eggNOGiENOG410IWTV Eukaryota
ENOG41120DD LUCA
GeneTreeiENSGT00910000144201
HOGENOMiHOG000236346
HOVERGENiHBG005960
InParanoidiB0V3D3
OMAiSWCLKEA
PhylomeDBiB0V3D3
TreeFamiTF351373

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
IPR003650 Orange_dom
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SM00511 ORANGE, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
PS51054 ORANGE, 1 hit

Sequencei

Sequence statusi: Complete.

B0V3D3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTPTITGSIS SRETLLTNKL RKPMVEKIRR ERINSSIEKL KTLLAQEFVK
60 70 80 90 100
QQPDSRQEKA DILEMTLDFL RRSQKSSAAG DGRSRCVQEA VSFLSQCPVQ
110 120 130 140 150
TQSHTRLMKL FLHMQTPADQ HTRVDNPQTT EKHANSSAKQ HTPARSHIWR

PW
Length:152
Mass (Da):17,490
Last modified:April 8, 2008 - v1
Checksum:iB6B880CBFD11C088
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU062502 Genomic DNA No translation available.
RefSeqiNP_001121862.1, NM_001128390.1
UniGeneiDr.32742

Genome annotation databases

EnsembliENSDART00000079265; ENSDARP00000073721; ENSDARG00000009822
GeneIDi100149066
KEGGidre:100149066

Similar proteinsi

Entry informationi

Entry nameiB0V3D3_DANRE
AccessioniPrimary (citable) accession number: B0V3D3
Entry historyiIntegrated into UniProtKB/TrEMBL: April 8, 2008
Last sequence update: April 8, 2008
Last modified: March 28, 2018
This is version 88 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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