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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Heliobacterium modesticaldum (strain ATCC 51547 / Ice1)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciHMOD498761:G1GB0-1302-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:Helmi_13650
ORF Names:HM1_1413
OrganismiHeliobacterium modesticaldum (strain ATCC 51547 / Ice1)
Taxonomic identifieri498761 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesHeliobacteriaceaeHeliobacterium
Proteomesi
  • UP000008550 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10001441361 – 14450S ribosomal protein L13Add BLAST144

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi498761.HM1_1413

Structurei

3D structure databases

ProteinModelPortaliB0TC91
SMRiB0TC91
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5 Bacteria
COG0102 LUCA
HOGENOMiHOG000225286
KOiK02871
OMAiVLMGKHK
OrthoDBiPOG091H013T

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR005823 Ribosomal_L13_bac-type
IPR023563 Ribosomal_L13_CS
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01066 rplM_bact, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

B0TC91-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTFMAKAED VERKWYVIDA ADKPLGRVAS EAARLLRGKH KPIFTPHVDT
60 70 80 90 100
GDHVIIINAE KVALTGKKLT QKLYYHHSRY PGGMTLINYG TLLKTRPERA
110 120 130 140
VEKAIKGMLP KNRLGEQMYR KLNVYKGEAH PHQAQKPEAW TIRD
Length:144
Mass (Da):16,447
Last modified:April 8, 2008 - v1
Checksum:iF6991ACD1DB28475
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000930 Genomic DNA Translation: ABZ83990.1
RefSeqiWP_012282506.1, NC_010337.2

Genome annotation databases

EnsemblBacteriaiABZ83990; ABZ83990; HM1_1413
KEGGihmo:HM1_1413

Similar proteinsi

Entry informationi

Entry nameiRL13_HELMI
AccessioniPrimary (citable) accession number: B0TC91
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: April 8, 2008
Last modified: February 28, 2018
This is version 67 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

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