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Protein
Submitted name:

LETM1 domain-containing 1

Gene

Letmd1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
LETM1 domain-containing 1Imported
Submitted name:
Letmd1 proteinImported
Gene namesi
Name:Letmd1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi1596738 Letmd1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei138 – 161HelicalSequence analysisAdd BLAST24

Keywords - Cellular componenti

Membrane, MitochondrionPROSITE-ProRule annotation

Expressioni

Gene expression databases

BgeeiENSRNOG00000029855 Expressed in 10 organ(s), highest expression level in liver
GenevisibleiB0K026 RN

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini186 – 371Letm1 RBDInterPro annotationAdd BLAST186

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG4263 Eukaryota
ENOG410ZXCM LUCA
GeneTreeiENSGT00390000018328
HOGENOMiHOG000037443
HOVERGENiHBG108107
OMAiVFRCLQA
OrthoDBiEOG091G0GD0
TreeFamiTF314047

Family and domain databases

InterProiView protein in InterPro
IPR011685 LETM1
IPR033122 LETM1_RBD
PfamiView protein in Pfam
PF07766 LETM1, 1 hit
PROSITEiView protein in PROSITE
PS51758 LETM1_RBD, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

B0K026-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MALSRVCWSR AALWGSTVAP GPFVTRRLQL GRSGPAWRAP RSSKLHLSPK
60 70 80 90 100
ADVKNLISYV VTKTRAINGT YHRFLGRHFP RFYALYTTFI KGIQMLWADA
110 120 130 140 150
KKARRIKADM WKQNLKFHQL SYREMEHLRQ FRRDITKCLF IGLISIPPFA
160 170 180 190 200
NYLVFLLMYL FPRQLLVKHF WTPKQQIDFL DIYHGFRRRS HLEIITHLRR
210 220 230 240 250
ASALVSNEKL RWHLEDLCTK VQNGTHPTAQ DILALRDCFS TYPLGFSQLQ
260 270 280 290 300
ASQMRALSQA MLLTPYLPPP LLRWRLKSHT AVIHQLDRAL AKLGTGHLTP
310 320 330 340 350
QEVRSACYLR GLNSTHTSDD RCRTWLGEWL HISCSLKAIP GAAARKGHSI
360 370
HLREQRRLWP DKNDSSNKGD R
Length:371
Mass (Da):43,121
Last modified:March 18, 2008 - v1
Checksum:i6FEB00BCAF9C7321
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
G3V996G3V996_RAT
LETM1 domain-containing 1
Letmd1 rCG_50860
360Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07058899 Genomic DNA No translation available.
BC159426 mRNA Translation: AAI59427.1
RefSeqiNP_001116253.3, NM_001122781.3
XP_006242416.1, XM_006242354.3
UniGeneiRn.102946

Genome annotation databases

EnsembliENSRNOT00000088681; ENSRNOP00000075497; ENSRNOG00000029855
GeneIDi681352
KEGGirno:681352

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07058899 Genomic DNA No translation available.
BC159426 mRNA Translation: AAI59427.1
RefSeqiNP_001116253.3, NM_001122781.3
XP_006242416.1, XM_006242354.3
UniGeneiRn.102946

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000088681; ENSRNOP00000075497; ENSRNOG00000029855
GeneIDi681352
KEGGirno:681352

Organism-specific databases

CTDi25875
RGDi1596738 Letmd1

Phylogenomic databases

eggNOGiKOG4263 Eukaryota
ENOG410ZXCM LUCA
GeneTreeiENSGT00390000018328
HOGENOMiHOG000037443
HOVERGENiHBG108107
OMAiVFRCLQA
OrthoDBiEOG091G0GD0
TreeFamiTF314047

Gene expression databases

BgeeiENSRNOG00000029855 Expressed in 10 organ(s), highest expression level in liver
GenevisibleiB0K026 RN

Family and domain databases

InterProiView protein in InterPro
IPR011685 LETM1
IPR033122 LETM1_RBD
PfamiView protein in Pfam
PF07766 LETM1, 1 hit
PROSITEiView protein in PROSITE
PS51758 LETM1_RBD, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiB0K026_RAT
AccessioniPrimary (citable) accession number: B0K026
Entry historyiIntegrated into UniProtKB/TrEMBL: March 18, 2008
Last sequence update: March 18, 2008
Last modified: November 7, 2018
This is version 80 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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