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Protein

Photosystem II D2 protein 2

Gene

psbD2

Organism
Acaryochloris marina (strain MBIC 11017)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Photosystem II (PSII) is a light-driven water: plastoquinone oxidoreductase that uses light energy to abstract electrons from H2O, generating O2 and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbA) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex.UniRule annotation

Miscellaneous

2 of the reaction center chlorophylls (ChlD1 and ChlD2) are entirely coordinated by water.UniRule annotation

Catalytic activityi

2 H2O + 2 plastoquinone + 4 light = O2 + 2 plastoquinol.UniRule annotation

Cofactori

Note: The D1/D2 heterodimer binds P680, chlorophylls that are the primary electron donor of PSII, and subsequent electron acceptors. It shares a non-heme iron and each subunit binds pheophytin, quinone, additional chlorophylls, carotenoids and lipids. There is also a Cl(-1) ion associated with D1 and D2, which is required for oxygen evolution. The PSII complex binds additional chlorophylls, carotenoids and specific lipids.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi116Magnesium (chlorophyll-a ChlzD2, axial ligand; peripheral); via tele nitrogenUniRule annotation1
Binding sitei128Pheophytin D2UniRule annotation1
Binding sitei141Pheophytin D2UniRule annotation1
Metal bindingi196Magnesium (chlorophyll-a PD2 axial ligand); via tele nitrogenUniRule annotation1
Metal bindingi213Iron; shared with heterodimeric partner; via tele nitrogenUniRule annotation1
Binding sitei213Plastoquinone Q(A)UniRule annotation1
Binding sitei260Plastoquinone Q(A); via amide nitrogenUniRule annotation1
Metal bindingi267Iron; shared with heterodimeric partner; via tele nitrogenUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionOxidoreductase
Biological processElectron transport, Photosynthesis, Transport
LigandChlorophyll, Chromophore, Iron, Magnesium, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Photosystem II D2 protein 2UniRule annotation (EC:1.10.3.9UniRule annotation)
Short name:
PSII D2 protein 2UniRule annotation
Alternative name(s):
Photosystem Q(A) protein 2UniRule annotation
Gene namesi
Name:psbD2UniRule annotation
Ordered Locus Names:AM1_6045
OrganismiAcaryochloris marina (strain MBIC 11017)
Taxonomic identifieri329726 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaSynechococcalesAcaryochloridaceaeAcaryochloris
Proteomesi
  • UP000000268 Componenti: Chromosome

Subcellular locationi

  • Cellular thylakoid membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei39 – 59HelicalUniRule annotationAdd BLAST21
Transmembranei123 – 139HelicalUniRule annotationAdd BLAST17
Transmembranei151 – 164HelicalUniRule annotationAdd BLAST14
Transmembranei206 – 226HelicalUniRule annotationAdd BLAST21
Transmembranei277 – 293HelicalUniRule annotationAdd BLAST17

GO - Cellular componenti

Keywords - Cellular componenti

Membrane, Photosystem II, Thylakoid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003595981 – 351Photosystem II D2 protein 2Add BLAST351

Proteomic databases

PRIDEiB0C3P0

Interactioni

Subunit structurei

Cyanobacterial PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, at least 3 peripheral proteins PsbO, PsbU, PsbV and a large number of cofactors. It forms dimeric complexes.UniRule annotation

Protein-protein interaction databases

STRINGi329726.AM1_6045

Structurei

3D structure databases

ProteinModelPortaliB0C3P0
SMRiB0C3P0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the reaction center PufL/M/PsbA/D family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105D6H Bacteria
ENOG410XRUT LUCA
HOGENOMiHOG000233052
KOiK02706
OMAiHTIISHF
OrthoDBiPOG091H1437

Family and domain databases

Gene3Di1.20.85.10, 1 hit
HAMAPiMF_01383 PSII_PsbD_D2, 1 hit
InterProiView protein in InterPro
IPR036854 Photo_II_D1/D2_sf
IPR000484 Photo_RC_L/M
IPR005868 PSII_PsbD/D2
PANTHERiPTHR33149 PTHR33149, 1 hit
PfamiView protein in Pfam
PF00124 Photo_RC, 1 hit
PRINTSiPR00256 REACTNCENTRE
SUPFAMiSSF81483 SSF81483, 1 hit
TIGRFAMsiTIGR01152 psbD, 1 hit
PROSITEiView protein in PROSITE
PS00244 REACTION_CENTER, 1 hit

Sequencei

Sequence statusi: Complete.

B0C3P0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVALGRVQE RGWFDVLDDW LKRDRFVFIG WSGLLLFPCA FLSIGGWFTG
60 70 80 90 100
TTFVTSWYTH GLASSYLEGC NFLTAAVSTP ADSMGHSLLL LWGPEARGDF
110 120 130 140 150
TRWCQLGGMW NFVTLHGAFG LIGFMLRQFE IARLVNVRPY NAVAFSGPIA
160 170 180 190 200
VFVSVFLMYP LGQSSWFFAP SWGVASIFRF LLFVQGFHNL TLNPFHMMGV
210 220 230 240 250
AGILGGALLC AIHGATVENT LFEDTKDANT FSGFSPTQSE ETYSMVTANR
260 270 280 290 300
FWSQIFGIAF SNKRWLHFFM LFVPVTGLWA SAIGLVGIAL NMRAYDFVSQ
310 320 330 340 350
EIRAAEDPEF ETFYTKNILL NEGLRAWMAP QDQIHENFVF PEEVLPRGNA

L
Length:351
Mass (Da):39,405
Last modified:February 26, 2008 - v1
Checksum:i79E3F4CCC63AFA14
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000828 Genomic DNA Translation: ABW30977.1
RefSeqiWP_012166176.1, NC_009925.1

Genome annotation databases

EnsemblBacteriaiABW30977; ABW30977; AM1_6045
KEGGiamr:AM1_6045

Similar proteinsi

Entry informationi

Entry nameiPSBD2_ACAM1
AccessioniPrimary (citable) accession number: B0C3P0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: February 26, 2008
Last modified: April 25, 2018
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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