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Protein
Submitted name:

Growth factor independent 1B (Predicted)

Gene

Gfi1b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Growth factor independent 1B (Predicted)Imported
Submitted name:
Growth factor independent 1B transcription repressorImported
Submitted name:
Growth factor-independent 1B transcriptional repressorImported
Gene namesi
Name:Gfi1bImported
Synonyms:Gfi1b_predictedImported
ORF Names:rCG_45540Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi1311727 Gfi1b

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000011353

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000015236

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini163 – 191C2H2-typeInterPro annotationAdd BLAST29
Domaini192 – 219C2H2-typeInterPro annotationAdd BLAST28
Domaini220 – 247C2H2-typeInterPro annotationAdd BLAST28
Domaini248 – 275C2H2-typeInterPro annotationAdd BLAST28
Domaini276 – 303C2H2-typeInterPro annotationAdd BLAST28
Domaini304 – 330C2H2-typeInterPro annotationAdd BLAST27

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00740000115096
HOVERGENiHBG106655
KOiK09223
OMAiKKAHTYH
TreeFamiTF350784

Family and domain databases

InterProiView protein in InterPro
IPR037044 Gfi-1b
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PANTHERiPTHR44643 PTHR44643, 1 hit
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 6 hits
SUPFAMiSSF57667 SSF57667, 3 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 6 hits
PS50157 ZINC_FINGER_C2H2_2, 6 hits

Sequencei

Sequence statusi: Complete.

B0BN50-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRSFLVKSK KAHTYHQPRA QGDDLVWPPA VIPVAKEHTQ SGSPVLSTLL
60 70 80 90 100
PSQTLDWSAV KQKQEMLLNQ SLPKMASAPE GPHVTSQPQD GESPLSESPP
110 120 130 140 150
FYKPSFSWDT LASSYRHSYQ QTPSTMQSAF LERSVRLYGS PLVPSTESPL
160 170 180 190 200
DFSLRYSPGM DTYHCVKCNK VFSTPHGLEV HVRRSHSGTR PFACDICGKT
210 220 230 240 250
FGHAVSLEQH THVHSQERSF ECRMCGKAFK RSSTLSTHLL IHSDTRPYPC
260 270 280 290 300
QFCGKRFHQK SDMKKHTYIH TGEKPHKCQV CGKAFSQSSN LITHSRKHTG
310 320 330
FKPFSCELCT KGFQRKVDLR RHRESQHNLK
Length:330
Mass (Da):37,385
Last modified:February 26, 2008 - v1
Checksum:iAE8461237C5EF4CA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC129847 Genomic DNA No translation available.
BC158685 mRNA Translation: AAI58686.1
CH474001 Genomic DNA Translation: EDL93404.1
RefSeqiNP_001101293.1, NM_001107823.1
UniGeneiRn.47963

Genome annotation databases

EnsembliENSRNOT00000015236; ENSRNOP00000015236; ENSRNOG00000011353
ENSRNOT00000078428; ENSRNOP00000070622; ENSRNOG00000011353
GeneIDi311832
KEGGirno:311832
UCSCiRGD:1311727 rat

Similar proteinsi

Entry informationi

Entry nameiB0BN50_RAT
AccessioniPrimary (citable) accession number: B0BN50
Secondary accession number(s): D3ZHB6
Entry historyiIntegrated into UniProtKB/TrEMBL: February 26, 2008
Last sequence update: February 26, 2008
Last modified: May 23, 2018
This is version 74 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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