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Protein
Submitted name:

Zcchc2 protein

Gene

zcchc2

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Zcchc2 proteinImported
Gene namesi
Name:zcchc2Imported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)Imported
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-985101 zcchc2

Expressioni

Gene expression databases

BgeeiENSXETG00000032980 Expressed in 11 organ(s), highest expression level in blastula

Interactioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000058372

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini997 – 1012CCHC-typeInterPro annotationAdd BLAST16

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410IZZC Eukaryota
ENOG4111U3M LUCA
GeneTreeiENSGT00520000055637
HOVERGENiHBG108762
KOiK22700
OMAiLTHSTAQ
OrthoDBiEOG091G01BF
TreeFamiTF335574

Family and domain databases

Gene3Di3.30.1520.10, 1 hit
InterProiView protein in InterPro
IPR036871 PX_dom_sf
IPR001878 Znf_CCHC
IPR036875 Znf_CCHC_sf
PfamiView protein in Pfam
PF00098 zf-CCHC, 1 hit
SMARTiView protein in SMART
SM00343 ZnF_C2HC, 1 hit
SUPFAMiSSF57756 SSF57756, 1 hit
SSF64268 SSF64268, 1 hit
PROSITEiView protein in PROSITE
PS50158 ZF_CCHC, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

B0BLW2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLKMKLPLKK SKHKASDEEE EDEEERAAMC DTPHDWAAPG DSLHRETVYR
60 70 80 90 100
WFVKSLGPAN RLEFAYGLLD LCNPLELRFL GSCLEDLARR DCHYLRECEN
110 120 130 140 150
KANGLAGEPL LGDLGEPISR AKLIIYLALL NSGSREVASR LYRLLLPEVG
160 170 180 190 200
IERVLGGRDR EEDSAEAATA REELLLLFTM ASLHPAFTFH QRVTLRERLD
210 220 230 240 250
RLREAMGRKS RPEGSVNEYL PNSEDHVSSN DSVCHNGIST VSHKLQNEAV
260 270 280 290 300
HIEKIAFKGA QRKRADKNLE YTFKVTWSDH SVTSVTKSHH ELLEFLLMLP
310 320 330 340 350
NELSREAFDE TILRALNQGS QKREDRRHTD LEPIIRLMFR SPSQALLQNQ
360 370 380 390 400
KVYKFFNSLP MESSPSRSIV QANQKSCKTP ELFKEDSSEA SSQEEENQHR
410 420 430 440 450
LTIYKKPLGK CPVVKNTSTI KNSPTDGLHK QPCEQNGETD WRKSACPKSS
460 470 480 490 500
HSEHCINLEH ARTVDNWNLR MTSREKTPSQ RYNAEKLDGR SINRNNGVKT
510 520 530 540 550
VQSLRTTVGK EQTLEVGSGH DTCGETSSES YSSPSSPRHD RRESFESEDE
560 570 580 590 600
KERDTDSNSD ESTKNGPSFP TFGTVTAPIA KSVSLGNDEA RVNNNLHLPK
610 620 630 640 650
YSHIPFLAPM HCMISNGSEK LDPVLISPGS VSSVREPFSQ APIGMGQKLV
660 670 680 690 700
ASATGESEKH IEILTPLPLP STFLPRNCQP SNHALHLPVS RLKISSPQGP
710 720 730 740 750
AETCTMNGSA QTGLALGTAS GFISGHSSVG FSPSPSAAPD PITKHLSQVV
760 770 780 790 800
GLNQVVPHRD GGAMPPPTNL KLVLPSTNLS PAPPAVPYPL PGATLASANT
810 820 830 840 850
NVLNAAATTA SSQPASVGIG LGQATVPPAV PTHTPGPAPS PSPALTHSTA
860 870 880 890 900
QSDSTPFISA AVNNTSTNGT LLTPQPVGPG ACGSCGRRCS CGNNGGAPVS
910 920 930 940 950
YIYANTVPGP VYRGSPFLTF VNGTYLNQAH QSNGAQLPFY LTPYPNGLMH
960 970 980 990 1000
DPLLGGQTSY GMQQIPGYGR FFPGYQTPNV VASANGSGPK KSSNVSCYNC
1010 1020 1030
GLTGHYANDC KQPHMEANQQ GNRDNSQRTC F
Length:1,031
Mass (Da):112,231
Last modified:February 26, 2008 - v1
Checksum:i98AEB7B7C085DE69
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F6XGS4F6XGS4_XENTR
Uncharacterized protein
zcchc2
960Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01033054 Genomic DNA No translation available.
AAMC01033055 Genomic DNA No translation available.
AAMC01033056 Genomic DNA No translation available.
BC158182 mRNA Translation: AAI58183.1
RefSeqiNP_001107693.1, NM_001114221.1
UniGeneiStr.40246

Genome annotation databases

EnsembliENSXETT00000062423; ENSXETP00000058372; ENSXETG00000032980
GeneIDi779526
KEGGixtr:779526

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01033054 Genomic DNA No translation available.
AAMC01033055 Genomic DNA No translation available.
AAMC01033056 Genomic DNA No translation available.
BC158182 mRNA Translation: AAI58183.1
RefSeqiNP_001107693.1, NM_001114221.1
UniGeneiStr.40246

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi8364.ENSXETP00000058372

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSXETT00000062423; ENSXETP00000058372; ENSXETG00000032980
GeneIDi779526
KEGGixtr:779526

Organism-specific databases

CTDi54877
XenbaseiXB-GENE-985101 zcchc2

Phylogenomic databases

eggNOGiENOG410IZZC Eukaryota
ENOG4111U3M LUCA
GeneTreeiENSGT00520000055637
HOVERGENiHBG108762
KOiK22700
OMAiLTHSTAQ
OrthoDBiEOG091G01BF
TreeFamiTF335574

Gene expression databases

BgeeiENSXETG00000032980 Expressed in 11 organ(s), highest expression level in blastula

Family and domain databases

Gene3Di3.30.1520.10, 1 hit
InterProiView protein in InterPro
IPR036871 PX_dom_sf
IPR001878 Znf_CCHC
IPR036875 Znf_CCHC_sf
PfamiView protein in Pfam
PF00098 zf-CCHC, 1 hit
SMARTiView protein in SMART
SM00343 ZnF_C2HC, 1 hit
SUPFAMiSSF57756 SSF57756, 1 hit
SSF64268 SSF64268, 1 hit
PROSITEiView protein in PROSITE
PS50158 ZF_CCHC, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiB0BLW2_XENTR
AccessioniPrimary (citable) accession number: B0BLW2
Entry historyiIntegrated into UniProtKB/TrEMBL: February 26, 2008
Last sequence update: February 26, 2008
Last modified: September 12, 2018
This is version 62 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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