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Protein
Submitted name:

Predicted protein

Gene

PHYPADRAFT_230293

Organism
Physcomitrella patens subsp. patens (Moss)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Predicted proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:PHYPADRAFT_230293Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPhyscomitrella patens subsp. patens (Moss)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3218 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaBryophytaBryophytinaBryopsidaFunariidaeFunarialesFunariaceaePhyscomitrella

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3218.PP1S99_63V6.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

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ProteinModelPortali
A9SNV0

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini516 – 705SEC7InterPro annotationAdd BLAST190

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili1256 – 1276Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0928 Eukaryota
COG5307 LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
A9SNV0

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00171 Sec7, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.1000.11, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR016024 ARM-type_fold
IPR023394 Sec7_C_sf
IPR000904 Sec7_dom
IPR035999 Sec7_dom_sf
IPR032691 Sec7_N

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01369 Sec7, 1 hit
PF12783 Sec7_N, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00222 Sec7, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48371 SSF48371, 1 hit
SSF48425 SSF48425, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50190 SEC7, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A9SNV0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVNYEVSAVL AVMRRNARWA GRFSASDDQL EHPLIRSLKG LRRLVFTWRQ
60 70 80 90 100
PWPSIDPCLY LSPFLDVIRS DETGAQITGV ALSAVYKMVH LNFFDLNTAH
110 120 130 140 150
VDIAMHTVVD SVTSCRFEVT DPASEEVVLM KILQVLLACM KSEAGALLSD
160 170 180 190 200
RDVCNIVNTT FRVVHQAGSK GELLQRTARF TMHELVRAVF SHLPTLKPTN
210 220 230 240 250
LTIGVTPLST EISSNPGNVA DQSGSEEGNS FSGPVQTDEN PFRDGSLDDG
260 270 280 290 300
GGHAAIGTVG SAEDSNFAAY GVPCMVEIFS FLCSLLNIAD PQGLGQLVLA
310 320 330 340 350
SDEDSPQFAL MLINSALELG GEAFRNHPKL LALIQDELFR NLMEIGLSQN
360 370 380 390 400
PLVLSLVFGV VLNLYHHLRV LMKLQLEAFF SFVLIRLASG KYGATYQQQE
410 420 430 440 450
VALEALVDFC RQPTFMPEMY ANFDCDTSLS NTFEDLVNLL SKNAFPVNCP
460 470 480 490 500
LSAMHVLALE GLLAVAQSMA DRVDTAVPAF ASSTSPSNLA GDNPEYVPFW
510 520 530 540 550
TLKCENYDDP LSWVQFVKHQ KYIKGRLMVG ADHFNRDPKK GLEFLQGMQL
560 570 580 590 600
LPSEPDPKSL ACFIRYCTGL NKSVIGDYLG NPDEFCLRVL DEFAQTFDFS
610 620 630 640 650
NMGIDAALRV FLEGFRLPGE AQKIHRIVEA FADRYYQQSK GILASKDAAF
660 670 680 690 700
VLSYSVIMLN TDQHNKQVRK KMTEDDFIKN LRKINDGQDL PRSMLSELYH
710 720 730 740 750
SIVRDEIRIS YDSGAGVAEM THSRWIDLIR RSMITTPYIT CDERPLLDYD
760 770 780 790 800
MFPVLSGPSI AAISVVFDHA EDEEVMQLCI DGFLAAAKIS ASHRLEDVVD
810 820 830 840 850
DLVVSLCKFT TLLNPFSSDE EPVIAFGDDK KARMATVAVF DIANKYGDFI
860 870 880 890 900
RTGWRNILDC ILRLQKLGLL PARVANESVE DTDARVAPMP DLIRHRRRNT
910 920 930 940 950
GLMSRFSQLL SLESDEPPSA PTEEELAAQQ RALQCVESCR IDQIFTDSKF
960 970 980 990 1000
LQAESLLQLA RAFVWAAGRP HRSGSSTEDE DTAVFCLELL ITVTLNNRDR
1010 1020 1030 1040 1050
IMLLWQGVYE HMAGIIQTSV FPGLLVEKAV FGLLGVCQRL LPYKEDLAEE
1060 1070 1080 1090 1100
LLRSLQLILK LDARVADAFC ERITQEVMVL VRANAAHIKS TIGWRTVTSL
1110 1120 1130 1140 1150
LSITARHPEA SEPGFEALTY VMQDGAHLSP ANYVLCVDAA RAFAEARVGG
1160 1170 1180 1190 1200
PGRSVRALDL LSDSVGCLTT WSKVHSESAD ASSGENVEEP SRYTQELTEM
1210 1220 1230 1240 1250
WLRLAQGLRK LCLEQREEVR NHAILCLQGC LSAAEILNLT PVLWAQSFKQ
1260 1270 1280 1290 1300
VVLNLLDELL ELAVRHSKEY KGMEDTLVLS IKFLSKSYLQ FLPQLVNLPS
1310 1320 1330 1340 1350
FESSWFQVLN HMEIFIKTKF RGKRSEKLQE LIPELLRNIL QVMHSQGILV
1360 1370 1380 1390 1400
QPTSPSQDSM WDLTWKHVGS IVPTLKPDIL KENRPEVKDG ESAVSQEQTP
1410 1420
SASIPCDVES EYTIVEKVDS VSTGDQG
Length:1,427
Mass (Da):159,006
Last modified:February 5, 2008 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i030CAB24C7BD3847
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
DS544988 Genomic DNA Translation: EDQ67100.1

NCBI Reference Sequences

More...
RefSeqi
XP_001768028.1, XM_001767976.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS544988 Genomic DNA Translation: EDQ67100.1
RefSeqiXP_001768028.1, XM_001767976.1

3D structure databases

ProteinModelPortaliA9SNV0
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3218.PP1S99_63V6.1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG0928 Eukaryota
COG5307 LUCA
InParanoidiA9SNV0

Family and domain databases

CDDicd00171 Sec7, 1 hit
Gene3Di1.10.1000.11, 1 hit
InterProiView protein in InterPro
IPR016024 ARM-type_fold
IPR023394 Sec7_C_sf
IPR000904 Sec7_dom
IPR035999 Sec7_dom_sf
IPR032691 Sec7_N
PfamiView protein in Pfam
PF01369 Sec7, 1 hit
PF12783 Sec7_N, 1 hit
SMARTiView protein in SMART
SM00222 Sec7, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit
SSF48425 SSF48425, 1 hit
PROSITEiView protein in PROSITE
PS50190 SEC7, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA9SNV0_PHYPA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A9SNV0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 5, 2008
Last sequence update: February 5, 2008
Last modified: November 7, 2018
This is version 60 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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